Mcpt1l3 (mast cell protease 1-like 3) - Rat Genome Database

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Gene: Mcpt1l3 (mast cell protease 1-like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Mcpt1l3
Name: mast cell protease 1-like 3
RGD ID: 1302933
Description: Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm; extracellular space; and intracellular membrane-bounded organelle; INTERACTS WITH indole-3-methanol; vinclozolin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: mast cell protease 1; mast cell protease 1-like 4; mast cell protease 2; mcpt1l4
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,806,391 - 33,809,219 (+)NCBIGRCr8
mRatBN7.21529,836,398 - 29,841,731 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,532,079 - 29,873,922 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01534,926,579 - 34,930,553 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,926,686 - 34,929,061 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01538,889,748 - 38,892,369 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41534,520,542 - 34,522,914 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11534,536,241 - 34,538,614 (+)NCBI
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. A genomic analysis of rat proteases and protease inhibitors. Puente XS and Lopez-Otin C, Genome Res 2004 Apr;14(4):609-22.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Mcpt1l3
336 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:56
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000038253, ENSRNOT00000043182
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system renal system reproductive system respiratory system appendage
High
Medium
Low 4 4 1 1
Below cutoff 3 2 19 18 9 18 1 1 8 9 5 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000027988   ⟹   ENSRNOP00000027988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1529,836,365 - 29,873,922 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000045948   ⟹   ENSRNOP00000050387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1529,532,079 - 29,873,922 (+)Ensembl
Rnor_6.0 Ensembl1534,926,686 - 34,929,061 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108851   ⟹   ENSRNOP00000087189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1529,835,955 - 29,873,922 (+)Ensembl
RefSeq Acc Id: NM_001408725   ⟹   NP_001395654
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81533,806,646 - 33,809,153 (+)NCBI
mRatBN7.21529,836,398 - 29,838,905 (+)NCBI
RefSeq Acc Id: XM_039093842   ⟹   XP_038949770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81533,807,095 - 33,809,219 (+)NCBI
mRatBN7.21529,836,847 - 29,841,731 (+)NCBI
RefSeq Acc Id: XM_063274514   ⟹   XP_063130584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81533,806,391 - 33,809,219 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000050387   ⟸   ENSRNOT00000045948
RefSeq Acc Id: XP_038949770   ⟸   XM_039093842
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K5U4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000027988   ⟸   ENSRNOT00000027988
RefSeq Acc Id: ENSRNOP00000087189   ⟸   ENSRNOT00000108851
RefSeq Acc Id: NP_001395654   ⟸   NM_001408725
- Peptide Label: precursor
- UniProtKB: A0A0G2K6M2 (UniProtKB/TrEMBL),   Q6IE11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130584   ⟸   XM_063274514
- Peptide Label: isoform X2
Protein Domains
Peptidase S1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IE57-F1-model_v2 AlphaFold Q6IE57 1-247 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1302933 AgrOrtholog
BioCyc Gene G2FUF-13667 BioCyc
Ensembl Genes ENSRNOG00000031304 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000031792 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027988 ENTREZGENE
  ENSRNOT00000027988.4 UniProtKB/TrEMBL
  ENSRNOT00000038253.6 UniProtKB/TrEMBL
  ENSRNOT00000045948.4 UniProtKB/TrEMBL
  ENSRNOT00000091167.2 UniProtKB/TrEMBL
  ENSRNOT00000091428.2 UniProtKB/TrEMBL
  ENSRNOT00000108851.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/TrEMBL
InterPro Pept_cys/ser_Trypsin-like UniProtKB/TrEMBL
  Peptidase_S1/S6_AS UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Peptidase_S1_S6 UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
NCBI Gene 408209 ENTREZGENE
PANTHER CHYMASE 2, MAST CELL-RELATED UniProtKB/TrEMBL
  KALLIKREIN-RELATED UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PhenoGen Mcpt1l3 PhenoGen
PRINTS CHYMOTRYPSIN UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000031304 RatGTEx
  ENSRNOG00000031792 RatGTEx
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Pept_Ser_Cys UniProtKB/TrEMBL
UniProt A0A0G2K5U4 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K6M2 ENTREZGENE
  F1LPL5_RAT UniProtKB/TrEMBL
  Q6IE11 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A0G2K6M2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-02-14 Mcpt1l3  mast cell protease 1-like 3      Symbol and Name status set to provisional 70820 PROVISIONAL