LOC108350588 (60S ribosomal protein L23-like) - Rat Genome Database

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Gene: LOC108350588 (60S ribosomal protein L23-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC108350588
Name: 60S ribosomal protein L23-like
RGD ID: 11504759
Description: Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL23 (ribosomal protein L23).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07051240.1; large ribosomal subunit protein uL14-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,394,526 - 28,405,307 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,399,788 - 28,400,292 (+)EnsemblGRCr8
mRatBN7.238,001,209 - 8,002,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,001,626 - 8,002,130 (+)EnsemblmRatBN7.2
Rnor_6.032,404,852 - 2,405,958 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,405,269 - 2,405,691 (+)NCBIrn6Rnor6.0
Celera32,828,135 - 2,829,241 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC108350588
45 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 17 50 63 126 90 11 47 29 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000032589   ⟹   ENSRNOP00000076508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,399,788 - 28,400,292 (+)Ensembl
mRatBN7.2 Ensembl38,001,626 - 8,002,130 (+)Ensembl
RefSeq Acc Id: XM_063284810   ⟹   XP_063140880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,394,526 - 28,405,307 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063140880 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076508.1
Ensembl Acc Id: ENSRNOP00000076508   ⟸   ENSRNOT00000032589
RefSeq Acc Id: XP_063140880   ⟸   XM_063284810
- UniProtKB: A0A8I5Y4M0 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11504759 AgrOrtholog
BioCyc Gene G2FUF-50483 BioCyc
Ensembl Genes ENSRNOG00000024412 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032589.6 UniProtKB/TrEMBL
Gene3D-CATH 2.40.150.20 UniProtKB/TrEMBL
InterPro Ribosomal_L14_sf UniProtKB/TrEMBL
  Ribosomal_L14P UniProtKB/TrEMBL
NCBI Gene LOC108350588 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L23 UniProtKB/TrEMBL
  PTHR11761 UniProtKB/TrEMBL
Pfam Ribosomal_L14 UniProtKB/TrEMBL
PhenoGen LOC108350588 PhenoGen
RatGTEx ENSRNOG00000024412 RatGTEx
SMART Ribosomal_L14 UniProtKB/TrEMBL
Superfamily-SCOP SSF50193 UniProtKB/TrEMBL
UniProt A0A8I5Y4M0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC108350588  60S ribosomal protein L23-like  AABR07051240.1    Data merged from RGD:15003587 737654 PROVISIONAL
2019-11-08 AABR07051240.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108350588  60S ribosomal protein L23-like      Symbol and Name status set to provisional 70820 PROVISIONAL