Rpl34l2 (ribosomal protein L34 like 2) - Rat Genome Database

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Gene: Rpl34l2 (ribosomal protein L34 like 2) Rattus norvegicus
Analyze
Symbol: Rpl34l2 (Ensembl: Rpl34l1)
Name: ribosomal protein L34 like 2 (Ensembl:ribosomal protein L34-like1)
RGD ID: 11502284
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L34 pseudogene; 60S ribosomal protein L34-like; large ribosomal subunit protein eL34-like; LOC108350542; ribosomal protein L34-like2
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,978,651 - 188,979,561 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1779,783,869 - 79,820,922 (+)EnsemblGRCr8
mRatBN7.23168,601,156 - 168,601,935 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1774,874,707 - 74,875,153 (+)EnsemblmRatBN7.2
Rnor_6.03176,992,361 - 176,993,093 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera3163,985,178 - 163,985,910 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 48 59 125 87 11 47 31 32 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039106766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000057895   ⟹   ENSRNOP00000054703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1779,783,869 - 79,820,922 (+)Ensembl
mRatBN7.2 Ensembl1774,874,707 - 74,875,153 (+)Ensembl
RefSeq Acc Id: XM_039106766   ⟹   XP_038962694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83188,978,651 - 188,979,561 (+)NCBI
mRatBN7.23168,601,156 - 168,601,935 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038962694 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000054703.2
RefSeq Acc Id: XP_038962694   ⟸   XM_039106766
- UniProtKB: D4A4W9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000054703   ⟸   ENSRNOT00000057895

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46275 BioCyc
Ensembl Genes ENSRNOG00000038045 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000057895.6 UniProtKB/TrEMBL
Gene3D-CATH 6.20.340.10 UniProtKB/TrEMBL
  6.20.370.70 UniProtKB/TrEMBL
InterPro Ribosomal_eL34_C_sf UniProtKB/TrEMBL
  Ribosomal_L34Ae UniProtKB/TrEMBL
  Ribosomal_L34e_CS UniProtKB/TrEMBL
NCBI Gene LOC108350542 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L34 UniProtKB/TrEMBL
Pfam Ribosomal_L34e UniProtKB/TrEMBL
PhenoGen Rpl34l2 PhenoGen
PRINTS RIBOSOMALL34 UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L34E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000038045 RatGTEx
UniProt D4A4W9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-01-27 Rpl34l2  ribosomal protein L34 like 2  Rpl34l2  ribosomal protein L34-like2  Name changed 629549 APPROVED
2023-09-19 Rpl34l2  ribosomal protein L34-like2  LOC108350542  60S ribosomal protein L34 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108350542  60S ribosomal protein L34 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL