LOC108351936 (60S ribosomal protein L30-like) - Rat Genome Database

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Gene: LOC108351936 (60S ribosomal protein L30-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC108351936
Name: 60S ribosomal protein L30-like
RGD ID: 11470202
Description: ENCODES a protein that exhibits RNA binding (inferred); FOUND IN ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large ribosomal subunit protein eL30-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8966,848,011 - 66,848,483 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2959,353,800 - 59,354,253 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0964,704,240 - 64,704,617 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl964,704,255 - 64,704,602 (-)Ensemblrn6Rnor6.0
Celera956,799,638 - 56,800,015 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
RNA binding  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC108351936
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000029708
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)963376862108376862Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)965657365108376720Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)964220169109220169Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)964220169109220169Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)964220169109220169Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)964220169109220169Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 10 47 95 77 74 48 28 48 6 215 91 81 57 54 26 9 9

Sequence


Ensembl Acc Id: ENSRNOT00000029708   ⟹   ENSRNOP00000073396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl964,704,255 - 64,704,602 (-)Ensembl
RefSeq Acc Id: XM_017596809   ⟹   XP_017452298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8966,848,011 - 66,848,483 (-)NCBI
mRatBN7.2959,353,800 - 59,354,253 (-)NCBI
Rnor_6.0964,704,240 - 64,704,617 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017452298 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000107657
  ENSRNOP00000107657.1
RefSeq Acc Id: XP_017452298   ⟸   XM_017596809
- UniProtKB: A0A0G2K5E6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073396   ⟸   ENSRNOT00000029708

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K5E6-F1-model_v2 AlphaFold A0A0G2K5E6 1-115 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696692
Promoter ID:EPDNEW_R7204
Type:multiple initiation site
Name:LOC108351936_1
Description:60S ribosomal protein L30-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0964,704,664 - 64,704,724EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11470202 AgrOrtholog
BioCyc Gene G2FUF-27472 BioCyc
Ensembl Genes ENSRNOG00000021406 Ensembl
  ENSRNOG00000090879 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000163831 ENTREZGENE
  ENSRNOT00000163831.1 UniProtKB/TrEMBL
NCBI Gene LOC108351936 ENTREZGENE
PhenoGen LOC108351936 PhenoGen
RatGTEx ENSRNOG00000021406 RatGTEx
  ENSRNOG00000090879 RatGTEx
UniProt A0A0G2K5E6 ENTREZGENE
  A0ABK0LU12_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108351936  60S ribosomal protein L30-like      Symbol and Name status set to provisional 70820 PROVISIONAL