Rpl35al2 (ribosomal protein L35A like 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rpl35al2 (ribosomal protein L35A like 2) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl35al2 (Ensembl: Rpl35al11)
Name: ribosomal protein L35A like 2 (Ensembl:ribosomal protein L35A like 11)
RGD ID: 11469370
Description: Enables ribonucleoprotein complex binding activity. Predicted to be involved in cytoplasmic translation; rRNA processing; and ribosomal large subunit biogenesis. Part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L35a pseudogene; 60S ribosomal protein L35a-like; large ribosomal subunit protein eL33-like; LOC108351377
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,555,117 - 135,555,628 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.26129,733,876 - 129,734,339 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6129,733,943 - 129,734,345 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl7112,991,862 - 113,001,285 (+)EnsemblmRatBN7.2
Rnor_6.06135,139,217 - 135,139,658 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera6127,302,507 - 127,302,948 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:1002715   PMID:6985899  


Genomics

Variants

.
Variants in Rpl35al2
4 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6131392689143944780Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 14 30 58 120 78 7 33 35 32 7 7

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039113377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039113377   ⟹   XP_038969305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,555,117 - 135,555,628 (+)NCBI
mRatBN7.26129,733,876 - 129,734,339 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038969305 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000039099.3
  ENSRNOP00000049054.4
  ENSRNOP00000105468
  ENSRNOP00000105468.1
RefSeq Acc Id: XP_038969305   ⟸   XM_039113377
- UniProtKB: A0A8L2QNQ0 (UniProtKB/TrEMBL),   A0A8L2QJQ6 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35871 BioCyc
Ensembl Genes ENSRNOG00000032348 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000070978 Ensembl
  ENSRNOG00000088459 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000091059 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043508.4 UniProtKB/TrEMBL
  ENSRNOT00000050438.4 UniProtKB/TrEMBL
  ENSRNOT00000169684 ENTREZGENE
  ENSRNOT00000169684.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.190 UniProtKB/TrEMBL
InterPro L35A_sf UniProtKB/TrEMBL
  Ribosomal_L35A UniProtKB/TrEMBL
  Ribosomal_L35Ae_CS UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
NCBI Gene LOC108351377 ENTREZGENE
PANTHER PTHR10902 UniProtKB/TrEMBL
Pfam Ribosomal_L35Ae UniProtKB/TrEMBL
PhenoGen Rpl35al2 PhenoGen
PROSITE RIBOSOMAL_L35AE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032348 RatGTEx
  ENSRNOG00000070978 RatGTEx
  ENSRNOG00000088459 RatGTEx
  ENSRNOG00000091059 RatGTEx
Superfamily-SCOP SSF50447 UniProtKB/TrEMBL
UniProt A0A8L2QJQ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QNQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LIN5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl35al2  ribosomal protein L35A like 2  LOC108351377  60S ribosomal protein L35a pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108351377  60S ribosomal protein L35a pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL