Alg13 (ALG13, UDP-N-acetylglucosaminyltransferase subunit) - Rat Genome Database

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Gene: Alg13 (ALG13, UDP-N-acetylglucosaminyltransferase subunit) Rattus norvegicus
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Symbol: Alg13 (Ensembl: Alg13l1)
Name: ALG13, UDP-N-acetylglucosaminyltransferase subunit (Ensembl:ALG13, UDP-N-acetylglucosaminyltransferase subunit like 1)
RGD ID: 11453602
Description: Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 36. Orthologous to human ALG13 (ALG13 UDP-N-acetylglucosaminyltransferase subunit); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC108349244; putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
RGD Orthologs
Human
Mouse
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X112,703,015 - 112,764,924 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX112,702,796 - 112,739,356 (+)EnsemblGRCr8
mRatBN7.2X107,906,320 - 107,968,232 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX107,885,093 - 107,942,695 (+)EnsemblmRatBN7.2
Rnor_6.0X115,582,591 - 115,619,339 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
CeleraX107,293,942 - 107,330,269 (+)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Alg13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X112,703,015 - 112,764,924 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX112,702,796 - 112,739,356 (+)EnsemblGRCr8
mRatBN7.2X107,906,320 - 107,968,232 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX107,885,093 - 107,942,695 (+)EnsemblmRatBN7.2
Rnor_6.0X115,582,591 - 115,619,339 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
CeleraX107,293,942 - 107,330,269 (+)NCBICelera
Cytogenetic MapXq34NCBI
ALG13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X111,681,170 - 111,760,649 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX111,665,811 - 111,760,649 (+)Ensemblhg38GRCh38
GRCh37X110,924,398 - 111,003,877 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X110,811,091 - 110,890,528 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X110,776,222 - 110,810,017NCBI
CeleraX111,403,980 - 111,483,384 (+)NCBICelera
Cytogenetic MapXq23NCBI
HuRefX100,545,131 - 100,625,338 (+)NCBIHuRef
CHM1_1X110,835,765 - 110,915,121 (+)NCBICHM1_1
T2T-CHM13v2.0X110,129,414 - 110,208,990 (+)NCBIT2T-CHM13v2.0
Alg13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X143,100,962 - 143,157,446 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX143,100,800 - 143,157,446 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X144,317,966 - 144,374,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX144,317,804 - 144,374,450 (+)Ensemblmm10GRCm38
MGSCv37X140,752,509 - 140,759,740 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X139,564,389 - 139,571,556 (+)NCBIMGSCv36mm8
CeleraX128,273,565 - 128,280,781 (+)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX65.42NCBI
Alg13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X96,559,713 - 96,617,212 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Alg13
276 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X80434318125434318Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX92979612117740458Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X105468858125434318Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 85 215 91 90 59 158 59 6 492 286 22 193 116 124 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000007968   ⟹   ENSRNOP00000007969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX115,561,358 - 115,568,217 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075912   ⟹   ENSRNOP00000068280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX107,885,093 - 107,942,690 (+)Ensembl
Rnor_6.0 EnsemblX115,561,347 - 115,619,339 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076521   ⟹   ENSRNOP00000068197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX115,561,347 - 115,619,339 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076680   ⟹   ENSRNOP00000068463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX115,561,332 - 115,569,259 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077034   ⟹   ENSRNOP00000067947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX115,561,332 - 115,589,757 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087859   ⟹   ENSRNOP00000073949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX112,702,796 - 112,739,356 (+)Ensembl
mRatBN7.2 EnsemblX107,885,109 - 107,942,695 (+)Ensembl
Rnor_6.0 EnsemblX115,563,038 - 115,619,505 (+)Ensembl
RefSeq Acc Id: XM_039100316   ⟹   XP_038956244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X112,703,015 - 112,739,360 (+)NCBI
mRatBN7.2X107,906,320 - 107,942,695 (+)NCBI
RefSeq Acc Id: XM_039100317   ⟹   XP_038956245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X112,703,015 - 112,739,360 (+)NCBI
mRatBN7.2X107,906,320 - 107,942,695 (+)NCBI
RefSeq Acc Id: XM_063280472   ⟹   XP_063136542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X112,703,015 - 112,739,360 (+)NCBI
RefSeq Acc Id: XR_005498315
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X112,703,015 - 112,764,924 (+)NCBI
mRatBN7.2X107,906,320 - 107,968,232 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956244 (Get FASTA)   NCBI Sequence Viewer  
  XP_038956245 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073949
  ENSRNOP00000073949.2
RefSeq Acc Id: XP_038956244   ⟸   XM_039100316
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6U8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038956245   ⟸   XM_039100317
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K6U8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000073949   ⟸   ENSRNOT00000087859
Ensembl Acc Id: ENSRNOP00000068280   ⟸   ENSRNOT00000075912
Ensembl Acc Id: ENSRNOP00000007969   ⟸   ENSRNOT00000007968
Ensembl Acc Id: ENSRNOP00000068463   ⟸   ENSRNOT00000076680
Ensembl Acc Id: ENSRNOP00000068197   ⟸   ENSRNOT00000076521
Ensembl Acc Id: ENSRNOP00000067947   ⟸   ENSRNOT00000077034
RefSeq Acc Id: XP_063136542   ⟸   XM_063280472
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K6U8 (UniProtKB/TrEMBL)
Protein Domains
OTU   Tudor

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11453602 AgrOrtholog
BioCyc Gene G2FUF-1487 BioCyc
Ensembl Genes ENSRNOG00000005753 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087859 ENTREZGENE
  ENSRNOT00000087859.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.70.80 UniProtKB/TrEMBL
InterPro OTU_dom UniProtKB/TrEMBL
  OTU_ubiquitin_thioesterase UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
NCBI Gene LOC108349244 ENTREZGENE
PANTHER ALG13 UDP-N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT UniProtKB/TrEMBL
  OTU DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam OTU UniProtKB/TrEMBL
PhenoGen Alg13 PhenoGen
PROSITE OTU UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005753 RatGTEx
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0G2K6U8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-08-01 Alg13  ALG13, UDP-N-acetylglucosaminyltransferase subunit  LOC108349244  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13  Name and Symbol changed 629549 APPROVED
2016-08-02 LOC108349244  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13      Symbol and Name status set to provisional 70820 PROVISIONAL