Rps29-ps21 (ribosomal protein S29, pseudogene 21) - Rat Genome Database

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Gene: Rps29-ps21 (ribosomal protein S29, pseudogene 21) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps29-ps21
Name: ribosomal protein S29, pseudogene 21
RGD ID: 11452897
Description: Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S29 pseudogene; 40S ribosomal protein S29-like; LOC108349831; ribosomal protein S29 like 2; Rps29l2; small ribosomal subunit protein uS14-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,081,027 - 23,081,361 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl123,081,146 - 23,081,316 (-)EnsemblGRCr8
mRatBN7.2121,261,797 - 21,262,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,261,896 - 21,262,066 (-)EnsemblmRatBN7.2
Rnor_6.0122,306,372 - 22,306,689 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera120,012,578 - 20,012,895 (-)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Rps29-ps21
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 9 32 58 33 2 14 18 4 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039095530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000050726   ⟹   ENSRNOP00000040703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl123,081,146 - 23,081,316 (-)Ensembl
mRatBN7.2 Ensembl121,261,896 - 21,262,066 (-)Ensembl
RefSeq Acc Id: XM_039095530   ⟹   XP_038951458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8123,081,027 - 23,081,361 (-)NCBI
mRatBN7.2121,261,797 - 21,262,125 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038951458 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040703
  ENSRNOP00000040703.3
RefSeq Acc Id: XP_038951458   ⟸   XM_039095530
- UniProtKB: A0A8L2ULK7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000040703   ⟸   ENSRNOT00000050726

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62099 BioCyc
Ensembl Genes ENSRNOG00000068524 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050726 ENTREZGENE
  ENSRNOT00000050726.6 UniProtKB/TrEMBL
Gene3D-CATH 30s Ribosomal Protein S14, Chain N UniProtKB/TrEMBL
InterPro 40S_S29/30S_S14z UniProtKB/TrEMBL
  Ribosomal_S14 UniProtKB/TrEMBL
  Ribosomal_S14/S29 UniProtKB/TrEMBL
NCBI Gene LOC108349831 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S29 PSEUDOGENE UniProtKB/TrEMBL
  PTHR12010 UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/TrEMBL
PhenoGen Rps29-ps21 PhenoGen
RatGTEx ENSRNOG00000068524 RatGTEx
UniProt A0A8L2ULK7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-12-01 Rps29-ps21  ribosomal protein S29, pseudogene 21  Rps29l2  ribosomal protein S29 like 2  Name and Symbol changed 629549 APPROVED
2023-10-16 Rps29l2  ribosomal protein S29 like 2  Rps29l1  ribosomal protein S29 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps29l1  ribosomal protein S29 like 1  LOC108349831  40S ribosomal protein S29 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108349831  40S ribosomal protein S29 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL