Rps12l10 (ribosomal protein S12 like 10) - Rat Genome Database

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Gene: Rps12l10 (ribosomal protein S12 like 10) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps12l10
Name: ribosomal protein S12 like 10
RGD ID: 11400929
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in maintenance of translational fidelity and ribosomal small subunit biogenesis. Predicted to be located in cytosol and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS12 (ribosomal protein S12).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S12 pseudogene; 40S ribosomal protein S12-like; AABR07016578.1; LOC108352809; small ribosomal subunit protein eS12-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,219,308 - 99,228,071 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21495,017,963 - 95,020,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,018,011 - 95,018,409 (-)EnsemblmRatBN7.2
Rnor_6.014105,066,994 - 105,078,033 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14105,069,167 - 105,069,565 (-)NCBIrn6Rnor6.0
Celera1494,032,274 - 94,041,293 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rps12l10
36 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)1496755448100078267Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)1486271332100078267Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat


Expression

RNA-SEQ Expression

circulatory system
ectoderm
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
4 19 43 9 6 15 34 7 14 14

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039092873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067365   ⟹   ENSRNOP00000061370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,018,011 - 95,018,409 (-)Ensembl
RefSeq Acc Id: XM_039092873   ⟹   XP_038948801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,219,308 - 99,228,071 (-)NCBI
mRatBN7.21495,017,963 - 95,020,005 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038948801 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061370
  ENSRNOP00000061370.1
RefSeq Acc Id: XP_038948801   ⟸   XM_039092873
- UniProtKB: D4A9C8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000061370   ⟸   ENSRNOT00000067365
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9C8-F1-model_v2 AlphaFold D4A9C8 1-132 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11400929 AgrOrtholog
BioCyc Gene G2FUF-14843 BioCyc
Ensembl Genes ENSRNOG00000042277 Ensembl
  ENSRNOG00000087613 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067365 ENTREZGENE
  ENSRNOT00000067365.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro L30e-like UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  Ribosomal_S12e UniProtKB/TrEMBL
NCBI Gene LOC108352809 ENTREZGENE
PANTHER PTHR11843 UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PhenoGen Rps12l10 PhenoGen
PRINTS RIBSOMALS12E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042277 RatGTEx
  ENSRNOG00000087613 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt D4A9C8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps12l10  ribosomal protein S12 like 10  LOC108352809  40S ribosomal protein S12 pseudogene  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC108352809  40S ribosomal protein S12 pseudogene  AABR07016578.1    Data merged from RGD:15004582 737654 PROVISIONAL
2019-11-08 AABR07016578.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108352809  40S ribosomal protein S12 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL