Rpl31l12 (ribosomal protein L31 like 12) - Rat Genome Database

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Gene: Rpl31l12 (ribosomal protein L31 like 12) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl31l12
Name: ribosomal protein L31 like 12
RGD ID: 11383155
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be part of cytosolic large ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L31 pseudogene; 60S ribosomal protein L31-like; large ribosomal subunit protein eL31-like; LOC108351931
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8963,328,374 - 63,328,802 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl963,328,350 - 63,328,816 (-)EnsemblGRCr8
mRatBN7.2955,833,911 - 55,834,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl896,875,636 - 96,876,010 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl955,833,950 - 55,834,327 (-)EnsemblmRatBN7.2
Rnor_6.0960,923,292 - 60,923,756 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera953,323,766 - 53,324,231 (-)NCBICelera
Cytogenetic Map9q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rpl31l12
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)956047863101047863Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)948718864108376862Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1598849Memor17Memory QTL 172.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)95746049778547958Rat
4889943Bss90Bone structure and strength QTL 904.1tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)95450650499506504Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
7 23 33 48 33 30 8 10 5 5

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039084574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047517   ⟹   ENSRNOP00000046515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl955,833,950 - 55,834,327 (-)Ensembl
Rnor_6.0 Ensembl960,923,329 - 60,923,706 (-)Ensembl
RefSeq Acc Id: XM_039084574   ⟹   XP_038940502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8963,328,374 - 63,328,802 (-)NCBI
mRatBN7.2955,833,911 - 55,834,622 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038940502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000046515
  ENSRNOP00000046515.1
  ENSRNOP00000049635.2
RefSeq Acc Id: XP_038940502   ⟸   XM_039084574
- UniProtKB: D3ZLA5 (UniProtKB/TrEMBL),   D3ZU04 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000046515   ⟸   ENSRNOT00000047517

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLA5-F1-model_v2 AlphaFold D3ZLA5 1-125 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11383155 AgrOrtholog
BioCyc Gene G2FUF-27547 BioCyc
Ensembl Genes ENSRNOG00000011501 UniProtKB/TrEMBL
  ENSRNOG00000030296 Ensembl
  ENSRNOG00000032947 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042885.3 UniProtKB/TrEMBL
  ENSRNOT00000047517 ENTREZGENE
  ENSRNOT00000047517.3 UniProtKB/TrEMBL
Gene3D-CATH 3.10.440.10 UniProtKB/TrEMBL
InterPro Ribosomal_L31e UniProtKB/TrEMBL
  Ribosomal_L31e_CS UniProtKB/TrEMBL
  Ribosomal_L31e_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC108351931 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L31 UniProtKB/TrEMBL
  PTHR10956 UniProtKB/TrEMBL
Pfam Ribosomal_L31e UniProtKB/TrEMBL
PhenoGen Rpl31l12 PhenoGen
PROSITE RIBOSOMAL_L31E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011501 RatGTEx
  ENSRNOG00000030296 RatGTEx
  ENSRNOG00000032947 RatGTEx
SMART Ribosomal_L31e UniProtKB/TrEMBL
Superfamily-SCOP SSF54575 UniProtKB/TrEMBL
UniProt D3ZLA5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU04 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl31l12  ribosomal protein L31 like 12  LOC108351931  60S ribosomal protein L31 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108351931  60S ribosomal protein L31 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL