LOC108348195 (vomeronasal type-2 receptor 116-like) - Rat Genome Database

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Gene: LOC108348195 (vomeronasal type-2 receptor 116-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC108348195
Name: vomeronasal type-2 receptor 116-like
RGD ID: 11359049
Description: Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC682526; similar to putative pheromone receptor (Go-VN4); vomeronasal type-2 receptor 116
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8172,230,790 - 72,246,030 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl172,230,811 - 72,246,030 (+)EnsemblGRCr8
mRatBN7.2163,556,978 - 63,572,218 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl163,556,738 - 63,572,569 (+)EnsemblmRatBN7.2
Rnor_6.0165,292,453 - 65,310,440 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0166,059,889 - 66,129,705 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4161,662,959 - 61,744,704 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera159,629,086 - 59,644,509 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in LOC108348195
179 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression

ectoderm
mesenchyme
nervous system
renal system
reproductive system
sensory system
visual system
6 1 7 1 1 6 6

Sequence


Ensembl Acc Id: ENSRNOT00000042466   ⟹   ENSRNOP00000049930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl163,556,811 - 63,572,569 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000046796   ⟹   ENSRNOP00000050552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl172,230,811 - 72,246,030 (+)Ensembl
mRatBN7.2 Ensembl163,556,738 - 63,572,569 (+)Ensembl
RefSeq Acc Id: XM_039095872   ⟹   XP_038951800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8172,230,790 - 72,246,030 (+)NCBI
mRatBN7.2163,556,978 - 63,572,218 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038951800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000050552
  ENSRNOP00000050552.5
RefSeq Acc Id: XP_038951800   ⟸   XM_039095872
- UniProtKB: D3ZPC9 (UniProtKB/TrEMBL),   A6KBC1 (UniProtKB/TrEMBL),   D3ZDW0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000050552   ⟸   ENSRNOT00000046796
Ensembl Acc Id: ENSRNOP00000049930   ⟸   ENSRNOT00000042466
Protein Domains
G-protein coupled receptors family 3 profile

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11359049 AgrOrtholog
BioCyc Gene G2FUF-61108 BioCyc
Ensembl Genes ENSRNOG00000070809 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046796 ENTREZGENE
  ENSRNOT00000046796.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.2300 UniProtKB/TrEMBL
  GPCR, family 3, nine cysteines domain UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/TrEMBL
  GPCR_3 UniProtKB/TrEMBL
  GPCR_3_9-Cys_dom UniProtKB/TrEMBL
  GPCR_3_9-Cys_sf UniProtKB/TrEMBL
  GPCR_3_C UniProtKB/TrEMBL
  GPCR_3_Ca_sens_rcpt-rel UniProtKB/TrEMBL
  GPCR_3_vmron_rcpt_2 UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
NCBI Gene LOC108348195 ENTREZGENE
PANTHER CALCIUM-SENSING RECEPTOR-RELATED UniProtKB/TrEMBL
  VOMERONASAL 2, RECEPTOR 113-RELATED UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
  ANF_receptor UniProtKB/TrEMBL
  NCD3G UniProtKB/TrEMBL
PhenoGen LOC108348195 PhenoGen
PRINTS GPCRMGR UniProtKB/TrEMBL
  VOMERONASL2R UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F3_4 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000070809 RatGTEx
Superfamily-SCOP Periplasmic binding protein-like I UniProtKB/TrEMBL
UniProt A6KBC1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDW0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPC9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC108348195  vomeronasal type-2 receptor 116-like  LOC682526  similar to putative pheromone receptor (Go-VN4)  Data merged from RGD:1597948 737654 PROVISIONAL
2016-08-02 LOC108348195  vomeronasal type-2 receptor 116-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC682526  similar to putative pheromone receptor (Go-VN4)      Symbol and Name status set to provisional 70820 PROVISIONAL