Kcna4 (potassium voltage-gated channel, shaker-related subfamily, member 4) - Rat Genome Database

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Gene: Kcna4 (potassium voltage-gated channel, shaker-related subfamily, member 4) Mus musculus
Analyze
Symbol: Kcna4
Name: potassium voltage-gated channel, shaker-related subfamily, member 4
RGD ID: 10831
MGI Page MGI
Description: Enables voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential. Acts upstream of or within monoatomic ion transmembrane transport and regulation of presynaptic membrane potential. Located in membrane. Is active in axon initial segment. Is expressed in brain; genital tubercle of female; heart; and hindlimb muscle. Orthologous to human KCNA4 (potassium voltage-gated channel subfamily A member 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Kv1.; Kv1.4; MGC124445; potassium voltage gated channel, shaker related subfamily, member 4; potassium voltage-gated channel subfamily A member 4; voltage-gated potassium channel subunit Kv1.4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392107,120,934 - 107,157,149 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2107,120,984 - 107,128,847 (+)EnsemblGRCm39 Ensembl
GRCm382107,290,589 - 107,326,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2107,290,639 - 107,298,502 (+)EnsemblGRCm38mm10GRCm38
MGSCv372107,130,746 - 107,138,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362107,091,493 - 107,099,343 (+)NCBIMGSCv36mm8
Celera2108,498,776 - 108,506,689 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
seizures  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Chromosomal location of fifteen unique mouse KRAB-containing zinc finger loci. Marine JC, etal., Mamm Genome 1996 Jun;7(6):413-6.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1383027   PMID:7905852   PMID:8020965   PMID:8663090   PMID:8808291   PMID:8950991   PMID:9169836   PMID:9192846   PMID:9547391   PMID:9852577   PMID:10349636   PMID:10601491  
PMID:10931824   PMID:10965135   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11507212   PMID:11889558   PMID:12067714   PMID:12477932   PMID:14559911   PMID:14664820   PMID:14686897  
PMID:15339906   PMID:16141072   PMID:16141073   PMID:16426762   PMID:16985003   PMID:17110412   PMID:17114649   PMID:17600124   PMID:18287559   PMID:18509034   PMID:18603586   PMID:19455133  
PMID:19474196   PMID:20371829   PMID:20643768   PMID:20943905   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22534482   PMID:22615428   PMID:22815518   PMID:24463703   PMID:25798587  
PMID:26152125   PMID:26378152   PMID:27507650   PMID:28646025   PMID:28671696   PMID:28706196   PMID:32247877   PMID:32581705   PMID:36417873   PMID:36604605   PMID:36872774  


Genomics

Comparative Map Data
Kcna4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392107,120,934 - 107,157,149 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2107,120,984 - 107,128,847 (+)EnsemblGRCm39 Ensembl
GRCm382107,290,589 - 107,326,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2107,290,639 - 107,298,502 (+)EnsemblGRCm38mm10GRCm38
MGSCv372107,130,746 - 107,138,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362107,091,493 - 107,099,343 (+)NCBIMGSCv36mm8
Celera2108,498,776 - 108,506,689 (+)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.12NCBI
KCNA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381130,009,730 - 30,017,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1130,009,730 - 30,017,030 (-)EnsemblGRCh38hg38GRCh38
GRCh371130,031,277 - 30,038,577 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361129,988,341 - 29,995,064 (-)NCBINCBI36Build 36hg18NCBI36
Build 341129,988,340 - 29,995,064NCBI
Celera1130,177,828 - 30,184,551 (-)NCBICelera
Cytogenetic Map11p14.1NCBI
HuRef1129,723,661 - 29,730,948 (-)NCBIHuRef
CHM1_11130,030,186 - 30,037,475 (-)NCBICHM1_1
T2T-CHM13v2.01130,143,826 - 30,151,124 (-)NCBIT2T-CHM13v2.0
Kcna4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83114,211,091 - 114,218,545 (+)NCBIGRCr8
mRatBN7.2393,756,399 - 93,778,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl393,756,446 - 93,769,162 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx397,313,368 - 97,316,494 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03105,912,302 - 105,915,428 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03103,683,372 - 103,686,498 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0398,293,295 - 98,300,763 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl398,297,554 - 98,300,680 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03104,897,715 - 104,905,175 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4392,781,795 - 92,784,921 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1392,678,222 - 92,681,349 (+)NCBI
Celera392,807,179 - 92,810,305 (+)NCBICelera
Cytogenetic Map3q33NCBI
Kcna4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554768,622,019 - 8,623,980 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554768,621,019 - 8,624,764 (-)NCBIChiLan1.0ChiLan1.0
KCNA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2932,230,491 - 32,237,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11132,206,256 - 32,242,513 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,975,072 - 29,991,716 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,876,486 - 29,882,630 (-)NCBIpanpan1.1PanPan1.1panPan2
KCNA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,114,251 - 50,120,070 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2150,115,506 - 50,117,506 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2149,557,789 - 49,560,814 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02151,289,806 - 51,292,829 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2151,289,841 - 51,291,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12150,305,592 - 50,307,634 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,435,227 - 50,437,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,057,264 - 51,060,288 (-)NCBIUU_Cfam_GSD_1.0
Kcna4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494734,464,135 - 34,471,672 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365337,588,950 - 7,596,696 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365337,588,965 - 7,596,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl230,605,564 - 30,613,452 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1230,605,503 - 30,615,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2233,068,113 - 33,074,583 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KCNA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1135,155,318 - 35,162,813 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl135,159,671 - 35,161,632 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038132,340,152 - 132,349,028 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kcna4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476619,155,792 - 19,161,647 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476619,154,841 - 19,161,810 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kcna4
942 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:627
Count of miRNA genes:396
Interacting mature miRNAs:486
Transcripts:ENSMUST00000037012, ENSMUST00000173191
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74524117114123532Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276421483110421651Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined280895334114895334Mouse
15092054Egrme5_mearly growth rate, maternal effect 5 (mouse)282190187118004745Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284008488118008593Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286095716120095823Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286095716120095823Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286095716120095823Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286095716120095823Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287440643121440778Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288015003122015170Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88143423122143570Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
4141448Mpaps1_mmicrophthalmia anophthalmia susceptibility 1 (mouse)Not determined97028557112115196Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000037012   ⟹   ENSMUSP00000037958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2107,120,984 - 107,128,847 (+)Ensembl
GRCm38.p6 Ensembl2107,290,639 - 107,298,502 (+)Ensembl
RefSeq Acc Id: ENSMUST00000173191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2107,121,740 - 107,124,817 (+)Ensembl
GRCm38.p6 Ensembl2107,291,395 - 107,294,472 (+)Ensembl
RefSeq Acc Id: NM_021275   ⟹   NP_067250
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392107,120,934 - 107,128,849 (+)NCBI
GRCm382107,290,589 - 107,298,504 (+)NCBI
MGSCv372107,130,746 - 107,138,661 (+)RGD
Celera2108,498,776 - 108,506,689 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006498812   ⟹   XP_006498875
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392107,121,423 - 107,157,149 (+)NCBI
GRCm382107,291,078 - 107,326,804 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_067250 (Get FASTA)   NCBI Sequence Viewer  
  XP_006498875 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB60668 (Get FASTA)   NCBI Sequence Viewer  
  AAI09015 (Get FASTA)   NCBI Sequence Viewer  
  BAC29309 (Get FASTA)   NCBI Sequence Viewer  
  EDL27774 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000037958
  ENSMUSP00000037958.3
GenBank Protein Q61423 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_067250   ⟸   NM_021275
- UniProtKB: Q8CBF8 (UniProtKB/Swiss-Prot),   Q61423 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006498875   ⟸   XM_006498812
- Peptide Label: isoform X1
- UniProtKB: Q8CBF8 (UniProtKB/Swiss-Prot),   Q61423 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000037958   ⟸   ENSMUST00000037012

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61423-F1-model_v2 AlphaFold Q61423 1-654 view protein structure

Promoters
RGD ID:6878162
Promoter ID:EPDNEW_M2531
Type:initiation region
Name:Kcna4_1
Description:Mus musculus potassium voltage-gated channel, shaker-relatedsubfamily, member 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382107,290,624 - 107,290,684EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96661 AgrOrtholog
Ensembl Genes ENSMUSG00000042604 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000037012 ENTREZGENE
  ENSMUST00000037012.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot
  1.20.120.350 UniProtKB/Swiss-Prot
  1.20.5.600 UniProtKB/Swiss-Prot
InterPro BTB/POZ_dom UniProtKB/Swiss-Prot
  Ion_trans_dom UniProtKB/Swiss-Prot
  K_chnl_volt-dep_Kv UniProtKB/Swiss-Prot
  K_chnl_volt-dep_Kv1 UniProtKB/Swiss-Prot
  K_chnl_volt-dep_Kv1.4 UniProtKB/Swiss-Prot
  K_chnl_volt-dep_Kv1.4_TID UniProtKB/Swiss-Prot
  K_chnl_volt-dep_Kv1.4_TID_sf UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
  T1-type_BTB UniProtKB/Swiss-Prot
  Volt_channel_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:16492 UniProtKB/Swiss-Prot
MGD MGI:96661 ENTREZGENE
NCBI Gene 16492 ENTREZGENE
PANTHER POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY A MEMBER 4 UniProtKB/Swiss-Prot
  PTHR11537 UniProtKB/Swiss-Prot
Pfam BTB_2 UniProtKB/Swiss-Prot
  Ion_trans UniProtKB/Swiss-Prot
  K_channel_TID UniProtKB/Swiss-Prot
PhenoGen Kcna4 PhenoGen
PRINTS KCHANNEL UniProtKB/Swiss-Prot
  KV14CHANNEL UniProtKB/Swiss-Prot
  KVCHANNEL UniProtKB/Swiss-Prot
  SHAKERCHANEL UniProtKB/Swiss-Prot
SMART BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
  Voltage-gated potassium channels UniProtKB/Swiss-Prot
UniProt KCNA4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8CBF8 ENTREZGENE
UniProt Secondary Q8CBF8 UniProtKB/Swiss-Prot