Abhd17c (abhydrolase domain containing 17C, depalmitoylase)

Gene: Abhd17c (abhydrolase domain containing 17C, depalmitoylase) Rattus norvegicus

Analyze

Symbol:

Abhd17c

Name:

abhydrolase domain containing 17C, depalmitoylase

RGD ID:

1308210

Description:

Predicted to enable palmitoyl-(protein) hydrolase activity. Involved in regulation of postsynapse organization. Is active in glutamatergic synapse. Orthologous to human ABHD17C (abhydrolase domain containing 17C, depalmitoylase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

abhydrolase domain containing 17C; abhydrolase domain-containing protein 17C; abhydrolase domain-containing protein FAM108C1; alpha/beta hydrolase domain-containing protein 17C; Fam108c1; family with sequence similarity 108, member C1; LOC361601; RGD1308210; similar to RIKEN cDNA 2210412D01

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	147,493,755 - 147,534,715 (-)	NCBI		GRCr8
mRatBN7.2	1	138,084,632 - 138,125,595 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	138,084,634 - 138,125,595 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	146,025,382 - 146,066,369 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	153,194,395 - 153,235,385 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	146,069,595 - 146,110,583 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	146,248,505 - 146,289,465 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	146,248,503 - 146,289,465 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	147,177,240 - 147,218,200 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	140,382,433 - 140,423,393 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	140,460,837 - 140,617,700 (-)	NCBI
Celera	1	130,105,101 - 130,146,062 (-)	NCBI		Celera
Cytogenetic Map	1	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

tyrosinemia type I (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

afimoxifene (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

diuron (EXP)

ethanol (ISO)

formaldehyde (ISO)

Heptachlor epoxide (ISO)

indometacin (ISO)

melphalan (ISO)

mercury dichloride (EXP)

nickel subsulfide (EXP)

paracetamol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

macromolecule depalmitoylation (IEA)

negative regulation of protein localization to microtubule (ISO)

positive regulation of protein localization to endosome (ISO)

regulation of postsynapse organization (IBA,IDA,IEP,IMP)

Cellular Component

dendritic spine (IEA)

endosome membrane (IBA)

glutamatergic synapse (IDA,IEP,IMP)

plasma membrane (IBA)

postsynaptic density (ISO)

postsynaptic density membrane (IEA)

recycling endosome membrane (IEA)

Molecular Function

palmitoyl-(protein) hydrolase activity (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Identification of PSD-95 Depalmitoylating Enzymes.	Yokoi N, etal., J Neurosci. 2016 Jun 15;36(24):6431-44. doi: 10.1523/JNEUROSCI.0419-16.2016.

Additional References at PubMed

PMID:12477932	PMID:26701913	PMID:28521134

Genomics

Comparative Map Data

Abhd17c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	147,493,755 - 147,534,715 (-)	NCBI		GRCr8
mRatBN7.2	1	138,084,632 - 138,125,595 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	138,084,634 - 138,125,595 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	146,025,382 - 146,066,369 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	153,194,395 - 153,235,385 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	146,069,595 - 146,110,583 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	146,248,505 - 146,289,465 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	146,248,503 - 146,289,465 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	147,177,240 - 147,218,200 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	140,382,433 - 140,423,393 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	140,460,837 - 140,617,700 (-)	NCBI
Celera	1	130,105,101 - 130,146,062 (-)	NCBI		Celera
Cytogenetic Map	1	q31	NCBI

ABHD17C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	80,695,310 - 80,755,621 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	80,679,684 - 80,755,621 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	80,987,651 - 81,047,962 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	78,774,707 - 78,835,017 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	15	57,925,147 - 57,985,463 (+)	NCBI		Celera
Cytogenetic Map	15	q25.1	NCBI
HuRef	15	57,745,874 - 57,806,199 (+)	NCBI		HuRef
CHM1_1	15	81,105,630 - 81,165,886 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	78,558,868 - 78,619,168 (+)	NCBI		T2T-CHM13v2.0

Abhd17c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	83,758,564 - 83,801,101 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	83,758,564 - 83,801,101 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	84,109,356 - 84,151,893 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	84,109,356 - 84,151,893 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	91,257,866 - 91,300,403 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	83,985,544 - 84,028,078 (-)	NCBI		MGSCv36	mm8
Celera	7	81,514,016 - 81,556,779 (-)	NCBI		Celera
Cytogenetic Map	7	D3	NCBI
cM Map	7	48.35	NCBI

Abhd17c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	11,495,651 - 11,543,405 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955416	11,495,651 - 11,543,276 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABHD17C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	69,961,549 - 70,022,177 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	74,123,788 - 74,184,270 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	59,676,295 - 59,736,771 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	78,633,494 - 78,693,159 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

ABHD17C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	56,881,405 - 56,928,305 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	59,530,349 - 59,578,106 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	57,304,187 - 57,351,926 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	57,304,187 - 57,353,444 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	56,814,246 - 56,861,971 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	57,020,436 - 57,068,329 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	57,359,618 - 57,407,376 (-)	NCBI		UU_Cfam_GSD_1.0

Abhd17c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	126,369,887 - 126,425,663 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936483	19,908,853 - 19,964,627 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABHD17C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	49,540,879 - 49,599,319 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	49,540,698 - 49,599,323 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	55,050,036 - 55,108,571 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABHD17C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	2,633,997 - 2,695,187 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	139,191,530 - 139,252,924 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Abhd17c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	21,046,247 - 21,094,399 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624768	21,045,019 - 21,094,621 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Abhd17c
154 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	466
Count of miRNA genes:	247
Interacting mature miRNAs:	306
Transcripts:	ENSRNOT00000017362
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	87580395	150700247	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	90664883	143200202	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	92948896	144267916	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
61346	Rf2	Renal disease susceptibility QTL 2	3.7		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	99267916	144267916	Rat
61399	Tcat1	Tongue tumor resistance QTL 1	3.3		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)	1	99267916	144267916	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
2303591	Gluco41	Glucose level QTL 41	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	102168504	147168504	Rat
61370	Mcs3	Mammary carcinoma susceptibility QTL 3	2.15		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	102268556	147268556	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	102813953	151162766	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	103111621	148111621	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	103111621	148111621	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	106047847	151047847	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	115585465	172949803	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
2313060	Bss71	Bone structure and strength QTL 71	2.6	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	1	118944747	163944747	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121006655	166006655	Rat
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	121767634	166767634	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	121833674	166833674	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
631570	Bp94	Blood pressure QTL 94		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123479780	142990467	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	168883176	Rat
9685799	Bp375	Blood pressure QTL 375			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	125611501	170611501	Rat
9685802	Bp376	Blood pressure QTL 376			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	126540680	171540680	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	130636910	175636910	Rat
631202	Gluco13	Glucose level QTL 13		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	131763437	159756369	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	133680936	178680936	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	136745990	163747690	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	136830018	181830018	Rat

Markers in Region

RH138465

Rat Assembly	Chr	Position (strand)	Source
Celera	X	40,876,670 - 40,876,794	UniSTS
Celera	1	130,105,518 - 130,105,642	UniSTS
Cytogenetic Map	1	q31	UniSTS

AI009154

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	138,085,164 - 138,085,370 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	146,249,034 - 146,249,239	NCBI	Rnor6.0
Rnor_5.0	1	147,177,769 - 147,177,974	UniSTS	Rnor5.0
RGSC_v3.4	1	140,382,962 - 140,383,167	UniSTS	RGSC3.4
Celera	1	130,105,630 - 130,105,835	UniSTS
RH 3.4 Map	1	1089.8	UniSTS
Cytogenetic Map	1	q31	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	34	48	41	11	41			66	35	41	11
Low		9	9		8		8	11	8				8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001100736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC107461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC169098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000017362 ⟹ ENSRNOP00000017362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	138,084,634 - 138,125,595 (-)	Ensembl
Rnor_6.0 Ensembl	1	146,248,503 - 146,289,465 (-)	Ensembl

RefSeq Acc Id:

NM_001100736 ⟹ NP_001094206

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	147,493,755 - 147,534,715 (-)	NCBI
mRatBN7.2	1	138,084,636 - 138,125,595 (-)	NCBI
Rnor_6.0	1	146,248,505 - 146,289,465 (-)	NCBI
Rnor_5.0	1	147,177,240 - 147,218,200 (-)	NCBI
RGSC_v3.4	1	140,382,433 - 140,423,393 (-)	RGD
Celera	1	130,105,101 - 130,146,062 (-)	RGD

Sequence:

show sequence

CGCCAGGCCGTCCCGATGCCCGAGCCCGGCCCCAGGATGAACGGCTTCTCGCTCGGCGAGCTGT
GCTGGCTCTTCTGCTGCCCTCCTTGTCCGAGCCGCATCGCCGCCAAGCTGGCCTTCCTGCCGCC
CGAACCCACCTACACGGTGCTGGCGCCCGAGCAGCGCGCGCCCGCGCCCGCTGCGACCCCGGCG
CCAGCCCCGGCGGCGCAGCCCGCTCCGGCCGAGGAGGGTGCGGGCCCCGGCGCGTGCAGCCTGC
ACCTGAGCGAGCGCGCCGACTGGCAGTACTCGCAGCGCGAACTGGACGCCGTAGAGGTCTTCTT
CTCGCGCACGGCCCGCGACAACCGGCTGGGCTGCATGTTCGTGCGCTGCGCGCCCTCCAGCCGC
TACACGCTGCTCTTCTCTCACGGCAACGCTGTGGACTTGGGCCAGATGTGTAGCTTCTACATCG
GCCTGGGCTCGCGCATCAACTGCAACATCTTTTCTTACGACTATTCGGGCTATGGTGTGAGCTC
CGGCAAGCCCTCCGAAAAGAATCTCTACGCCGACATCGACGCCGCGTGGCAGGCGTTGCGCACC
CGGTATGGTGTGAGTCCTGAGAACATTATCCTCTACGGACAGAGCATTGGCACTGTCCCCACTG
TGGACCTGGCCTCGCGGTATGAGTGTGCAGCCGTCATCCTCCATTCCCCTCTGATGTCTGGATT
GCGTGTTGCTTTTCCAGATACCAGGAAAACTTACTGCTTTGATGCTTTCCCCAGCATTGACAAG
ATATCTAAAGTCACCTCTCCTGTGTTGGTCATTCACGGTACCGAGGATGAGGTCATCGATTTCT
CGCATGGCTTGGCGATGTATGAGCGCTGTCCCCGTGCTGTAGAGCCCCTGTGGGTTGAGGGGGC
TGGGCACAATGATATAGAGCTCTATGCACAGTACCTAGAACGACTAAAACAGTTCATATCTCAC
GAGCTTCCCAACTCCTGAAGACGGCGGCCAACCTTACCTCATTACTGTGAAGCGAGGATCCTTG
TTTGCACACGCTTTGACTGGATTTAACAGTGATACCTAATAACCACAGAGAAGGGCCCAGCCTT
TGGGTGTTCTCCTTAAAGAGCTAACACAGTCTGTCTTTTGTACCTAATCTCCACCTTCCATTAG
GCTGAGCAGCTGGATTCTCAGCTGCAAGACCTTGCAGGAGTGGGAACGAGAGTTGACCATGAGG
GCTGTTTCCCAGGGCTGTAGACTAAAGTGTGATCAAGTCTGTCTCCCTCGCTGTCACCTCTGAT
TCCCCCCACCCACCGGTGCAGGATCACCGTCTCACCCATGTGCCGGTGTTTGACCTGAGGCGCT
TTCAGCCCTGGTGCCAAGGGTGCGATTCCTTTGTGAAGCTGTGGTAGTGTAACTGGAAAACTGT
GAGAAATCCTCCATTAACTCGTGTTAACACACAAGTCTTTCCCACACATGAAGAATGATTTCCT
GGAACTATCACTAACAGCTTCATCAACTGTTACCATTTAAATACAACTGGAATATTCTTAAACA
ACAGGAAACTGGGGTTTTTTTAAGTGTAAATTTATTACTAGCCAAGAGTTTTAATATTTTGATT
GTCTGGTCTAATAGAGCCTGGCCAACTGTCCCTCTGTAAAGTCCTCCTTGTCGGCTTTCTTAAA
GCCCTGTACATATTTGCAATTACATTGTGCACAAATTCTTAATGGATACATTTCTTTTGTCAGG
CTACAACAACAGACTGCAGATTCCTTGTTTGTATTGTAAATGATTGAATACATTTTGTTAATAT
GTTTTTATTCCTATGTTTTGCTATTAAAATTTTTATAACATTTCCAAGACAAAAAATTCCAAGT
TTCTGCTTTGAAGAATTTAGGTAATTAAATTACCCTAAGCTGATCTCTTAGTTTAGGAGTTCTT
TGGGTTTTGACACTGGAGTTGTGCCAGGTGAACATCAGAAACGAGATGTTTAAATCACTACACT
ACTTGTATTGGTTGCGGGATTGGGTTTGGGGTTGTTTGGTCTTATTTTAGTTTTCTTTTTTCAA
ATTTAAAAGCCTTAAATGTACTGTAAGCCTCAGATCGTTGTACAACTGGATTGCGTTGGTTGCC
AGTTTGTGTGCTGTTGCCTGGATGCGGCACGGTGGGTGGTAATGGAATAAAGGACGCATGGATC
CGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094206	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07462	(Get FASTA)	NCBI Sequence Viewer
	AAI69098	(Get FASTA)	NCBI Sequence Viewer
	B5DFK7	(Get FASTA)	NCBI Sequence Viewer
	EDM08763	(Get FASTA)	NCBI Sequence Viewer
	EDM08764	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017362
	ENSRNOP00000017362.5
	ENSRNOP00055026359
	ENSRNOP00060032390
	ENSRNOP00065039929

RefSeq Acc Id:

NP_001094206 ⟸ NM_001100736

- UniProtKB:

Q3B7U5 (UniProtKB/Swiss-Prot), B5DFK7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPEPGPRMNGFSLGELCWLFCCPPCPSRIAAKLAFLPPEPTYTVLAPEQRAPAPAATPAPAPAA
QPAPAEEGAGPGACSLHLSERADWQYSQRELDAVEVFFSRTARDNRLGCMFVRCAPSSRYTLLF
SHGNAVDLGQMCSFYIGLGSRINCNIFSYDYSGYGVSSGKPSEKNLYADIDAAWQALRTRYGVS
PENIILYGQSIGTVPTVDLASRYECAAVILHSPLMSGLRVAFPDTRKTYCFDAFPSIDKISKVT
SPVLVIHGTEDEVIDFSHGLAMYERCPRAVEPLWVEGAGHNDIELYAQYLERLKQFISHELPNS

hide sequence

RefSeq Acc Id:

ENSRNOP00000017362 ⟸ ENSRNOT00000017362

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B5DFK7-F1-model_v2	AlphaFold	B5DFK7	1-320	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690169

Promoter ID:

EPDNEW_R693

Type:

initiation region

Name:

Abhd17c_1

Description:

abhydrolase domain containing 17C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	146,289,520 - 146,289,580	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308210	AgrOrtholog
BioCyc Gene	G2FUF-58656	BioCyc
Ensembl Genes	ENSRNOG00000012683	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055019085	UniProtKB/Swiss-Prot
	ENSRNOG00060022583	UniProtKB/Swiss-Prot
	ENSRNOG00065028272	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000017362	ENTREZGENE
	ENSRNOT00000017362.6	UniProtKB/Swiss-Prot
	ENSRNOT00055032545	UniProtKB/Swiss-Prot
	ENSRNOT00060039175	UniProtKB/Swiss-Prot
	ENSRNOT00065048693	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.1820	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7455233	IMAGE-MGC_LOAD
InterPro	AB_hydrolase	UniProtKB/Swiss-Prot
	Hydrolase_4	UniProtKB/Swiss-Prot
KEGG Report	rno:361601	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125232	IMAGE-MGC_LOAD
NCBI Gene	361601	ENTREZGENE
PANTHER	ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 17C	UniProtKB/Swiss-Prot
Pfam	Hydrolase_4	UniProtKB/Swiss-Prot
PhenoGen	Abhd17c	PhenoGen
RatGTEx	ENSRNOG00000012683	RatGTEx
	ENSRNOG00055019085	RatGTEx
	ENSRNOG00060022583	RatGTEx
	ENSRNOG00065028272	RatGTEx
Superfamily-SCOP	SSF53474	UniProtKB/Swiss-Prot
UniProt	AB17C_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3B7U5	ENTREZGENE
UniProt Secondary	Q3B7U5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-02-13	Abhd17c	abhydrolase domain containing 17C, depalmitoylase	Abhd17c	abhydrolase domain containing 17C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-03-20	Abhd17c	abhydrolase domain containing 17C	Fam108c1	family with sequence similarity 108, member C1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Fam108c1	family with sequence similarity 108, member C1	RGD1308210	similar to RIKEN cDNA 2210412D01	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1308210	similar to RIKEN cDNA 2210412D01	RGD1308210_predicted	similar to RIKEN cDNA 2210412D01 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308210_predicted	similar to RIKEN cDNA 2210412D01 (predicted)	LOC361601_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361601_predicted	similar to RIKEN cDNA 2210412D01 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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