| 1000 | 70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | | Glucose level | fasting | 5 | 1 | 138272129 | Rat | n/a | region | qtl |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | Tongue tumor susceptibility | tongue tumor number | 5 | 17517235 | 168005953 | Rat | n/a | region | qtl |
| 1000 | 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | Lipid level | cholesterol level | 5 | 32701659 | 138272129 | Rat | n/a | region | qtl |
| 1000 | 1641912 | Alcrsp18 | Alcohol response QTL 18 | | | Alcohol response | loss of righting reflex | 5 | 36386126 | 148460381 | Rat | n/a | region | qtl |
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | Lipid level | serum cholesterol, post dietary | 5 | 41498818 | 155121024 | Rat | n/a | region | qtl |
| 1000 | 1331801 | Rf33 | Renal function QTL 33 | 4.149 | | Renal function | renal vascular resistance | 5 | 45499364 | 135916908 | Rat | n/a | region | qtl |
| 1000 | 1576312 | Emca8 | Estrogen-induced mammary cancer QTL 8 | 4.1 | | Mammary tumor susceptibility | estradiol-induced | 5 | 52434178 | 148460381 | Rat | n/a | region | qtl |
| 1000 | 70189 | Mcs5 | Mammary carcinoma susceptibility QTL 5 | 10.51 | | Mammary tumor susceptibility | | 5 | 58063971 | 139156771 | Rat | n/a | region | qtl |
| 1000 | 1358895 | Bp254 | Blood pressure QTL 254 | 3.6 | .0003 | Blood pressure | mean arterial | 5 | 61080077 | 134872385 | Rat | n/a | region | qtl |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | .001 | Lipid level | cholesterol | 5 | 62098646 | 149757440 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | .0001 | Blood pressure | salt-loaded systolic | 5 | 62555131 | 168174140 | Rat | n/a | region | qtl |
| 1000 | 2306971 | Anxrr21 | Anxiety related response QTL 21 | 9.47 | | Anxiety response | | 5 | 68843563 | 130756605 | Rat | n/a | region | qtl |
| 1000 | 1354598 | Srn6 | Serum renin concentration QTL 6 | 3.8 | | Renin concentration | serum | 5 | 71971592 | 157597184 | Rat | n/a | region | qtl |
| 1000 | 1302790 | Scl20 | Serum cholesterol QTL 20 | 6.4 | .0001 | Lipid level | cholesterol level | 5 | 86116638 | 172913795 | Rat | n/a | region | qtl |
| 1000 | 1300122 | Wbc1 | White blood cell count QTL 1 | 2.75 | | White blood cell count | salt-loaded | 5 | 89261341 | 147065912 | Rat | n/a | region | qtl |
| 1000 | 1298086 | Bp156 | Blood pressure QTL 156 | | | Blood pressure | salt-loaded systolic | 5 | 90916908 | 135916908 | Rat | n/a | region | qtl |
| 1000 | 6903316 | Bw113 | Body weight QTL 113 | 2 | .0103 | Body weight | | 5 | 93245548 | 138245548 | Rat | n/a | region | qtl |
| 1000 | 1358909 | Kidm25 | Kidney mass QTL 25 | 1.87 | | Kidney mass | | 5 | 94084025 | 134872385 | Rat | n/a | region | qtl |
| 1000 | 1358889 | Bp261 | Blood pressure QTL 261 | 2.86 | | Blood pressure | mean arterial | 5 | 94084025 | 134872385 | Rat | n/a | region | qtl |
| 1000 | 631527 | Tls1 | T-lymphoma susceptibility QTL 1 | 3.5 | .001 | T-lymphoma susceptibility | propylnitrosourea induced | 5 | 94515803 | 139515803 | Rat | n/a | region | qtl |
| 1000 | 61452 | Ciaa5 | CIA Autoantibody QTL 5 | 3.5 | | Anti-type II collagen autoantibody titer | | 5 | 99080786 | 149757440 | Rat | n/a | region | qtl |
| 1000 | 1331796 | Thshl2 | Thyroid stimulating hormone level QTL 2 | 2.3 | | Thyroid stimulating hormone level | | 5 | 101506332 | 154014139 | Rat | n/a | region | qtl |
| 1000 | 2317753 | Glom24 | Glomerulus QTL 24 | 3.1 | | Renal pathology | glomerulus inflammation | 5 | 102024381 | 143540180 | Rat | n/a | region | qtl |
| 1000 | 1358187 | Emca1 | Estrogen-induced mammary cancer QTL 1 | 4.4 | | Mammary tumor susceptibility | estradiol-induced | 5 | 103677659 | 155120876 | Rat | n/a | region | qtl |
| 1000 | 1578673 | Bmd13 | Bone mineral density QTL 13 | 4.9 | | Bone mineral density | femoral neck trabecular vBMD | 5 | 108589975 | 153589975 | Rat | n/a | region | qtl |
| 1000 | 2317056 | Wbc3 | White blood cell count QTL 3 | 2.51 | .01 | White blood cell count | | 5 | 112840801 | 157840801 | Rat | n/a | region | qtl |
| 1000 | 1549838 | Bss4 | Bone structure and strength QTL 4 | 9.2 | | Bone structure and strength | Femoral midshaft moment of inertia | 5 | 113689301 | 158689301 | Rat | n/a | region | qtl |
| 1000 | 7207481 | Bss106 | Bone structure and strength QTL 106 | 7.9 | | Bone strength | Femoral ultimate force | 5 | 113689301 | 158689301 | Rat | n/a | region | qtl |
| 1000 | 7207486 | Bss109 | Bone structure and strength QTL 109 | | | Bone strength | Femoral energy to break | 5 | 113689301 | 158689301 | Rat | n/a | region | qtl |
| 1000 | 7207488 | Bss110 | Bone structure and strength QTL 1 | 8.4 | | Bone strength | Femoral stiffness | 5 | 113689301 | 158689301 | Rat | n/a | region | qtl |
| 1000 | 7207491 | Bss112 | Bone structure and strength QTL 112 | 7 | | Bone structure | Femoral midshaft cortical area | 5 | 113689301 | 158689301 | Rat | n/a | region | qtl |
| 1000 | 1298089 | Scl14 | Serum cholesterol level QTL 14 | 5.8 | .0004 | Lipid level | cholesterol | 5 | 115772027 | 160772027 | Rat | n/a | region | qtl |
| 1000 | 1598847 | Cm62 | Cardiac mass QTL 62 | 3.4 | | Cardiac mass | | 5 | 115772027 | 160772027 | Rat | n/a | region | qtl |
| 1000 | 1582230 | Bw78 | Body weight QTL 78 | 3.2 | .0016 | Body fat amount | adiposity index | 5 | 125254995 | 134872385 | Rat | n/a | region | qtl |
| 1000 | 1581510 | Cm54 | Cardiac mass QTL 54 | 3.4 | .05 | Cardiac mass | left ventricle | 5 | 126963761 | 150236260 | Rat | n/a | region | qtl |
| 1000 | 2293642 | Bss37 | Bone structure and strength QTL 37 | 4.64 | .0001 | Bone strength | | 5 | 126963761 | 157597184 | Rat | n/a | region | qtl |