| 1000 | 2317050 | Aia24 | Adjuvant induced arthritis QTL 24 | 2.06 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 15 | 52847908 | 73690657 | Rat | n/a | region | qtl |
| 1000 | 61477 | Aia4 | Adjuvant induced arthritis QTL 4 | 3 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 15 | 55596089 | 91365858 | Rat | n/a | region | qtl |
| 1000 | 1578647 | Bmd17 | Bone mineral density QTL 17 | 4 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1578646 | Bmd18 | Bone mineral density QTL 18 | 5.2 | | femur mineral mass (VT:0010011) | trabecular volumetric bone mineral density (CMO:0001729) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 2293686 | Bmd36 | Bone mineral density QTL 36 | 7.4 | 0.0001 | femur strength trait (VT:0010010) | femoral neck ultimate force (CMO:0001703) | 15 | 33611058 | 71477291 | Rat | n/a | region | qtl |
| 1000 | 2293691 | Bmd37 | Bone mineral density QTL 37 | 6.6 | 0.0001 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 15 | 33611058 | 71477291 | Rat | n/a | region | qtl |
| 1000 | 631655 | Bp126 | Blood pressure QTL 126 | 4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 15 | 58156477 | 101769107 | Rat | n/a | region | qtl |
| 1000 | 1578660 | Bss19 | Bone structure and strength QTL 19 | 4.3 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 15 | 22806240 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1582244 | Bw79 | Body weight QTL 79 | 4 | 0.0002 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 1582228 | Epfw3 | Epididymal fat weight QTL 3 | 4.1 | 0.0002 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 1598828 | Glom14 | Glomerulus QTL 14 | 2.5 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 15 | 34054139 | 79054139 | Rat | n/a | region | qtl |
| 1000 | 2317750 | Glom26 | Glomerulus QTL 26 | 4.3 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 15 | 12496141 | 65205939 | Rat | n/a | region | qtl |
| 1000 | 1582242 | Gluco28 | Glucose level QTL 28 | 3.3 | 0.0008 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 1582227 | Gluco30 | Glucose level QTL 30 | 3.6 | 0.0003 | blood glucose amount (VT:0000188) | absolute change in blood glucose level area under curve (CMO:0002034) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |
| 1000 | 631516 | Gluco31 | Glucose level QTL 31 | 7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 15 | 55596089 | 95018120 | Rat | n/a | region | qtl |
| 1000 | 724545 | Niddm54 | Non-insulin dependent diabetes mellitus QTL 54 | | 0.02 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 15 | 50794494 | 73699215 | Rat | n/a | region | qtl |
| 1000 | 1300144 | Rf23 | Renal function QTL 23 | 3.61 | | renal blood flow trait (VT:2000006) | absolute change in renal vascular resistance (CMO:0001900) | 15 | 40631268 | 98288169 | Rat | n/a | region | qtl |
| 1000 | 1331729 | Rf42 | Renal function QTL 42 | 3.071 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 15 | 17362897 | 73690657 | Rat | n/a | region | qtl |
| 1000 | 1576315 | Schws6 | Schwannoma susceptibility QTL 6 | | 0.0069 | nervous system integrity trait (VT:0010566) | post-insult time of death (CMO:0002005) | 15 | 53806152 | 98806152 | Rat | n/a | region | qtl |
| 1000 | 61424 | Scl1 | Serum cholesterol level QTL 1 | 7.7 | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 15 | 16725528 | 80672115 | Rat | n/a | region | qtl |
| 1000 | 10054130 | Srcrt8 | Stress Responsive Cort QTL 8 | 2.18 | 0.0085 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 15 | 22117933 | 67117933 | Rat | n/a | region | qtl |
| 1000 | 1582214 | Stl21 | Serum triglyceride level QTL 21 | 3.1 | 0.022 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 15 | 28030665 | 82262678 | Rat | n/a | region | qtl |