| 1000 | 1578671 | Bmd10 | Bone mineral density QTL 10 | 5.4 | | Bone mineral density | femoral neck cortical vBMD | 2 | 9670332 | 227150249 | Rat | n/a | region | qtl |
| 1000 | 1358894 | Kidm24 | Kidney mass QTL 24 | 4.03 | | Kidney mass | | 2 | 24474447 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1358899 | Kidm23 | Kidney mass QTL 23 | 3.88 | | Kidney mass | | 2 | 24474447 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1358901 | Cm38 | Cardiac mass QTL 38 | 2 | | Cardiac mass | | 2 | 24474447 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1358904 | Cm39 | Cardiac mass QTL 39 | 2.26 | | Cardiac mass | | 2 | 24474447 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1358910 | Kidm27 | Kidney mass QTL 27 | 5.77 | | Kidney mass | | 2 | 24474447 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1358911 | Kidm28 | Kidney mass QTL 28 | 5.42 | | Kidney mass | | 2 | 24474447 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1358913 | Cm41 | Cardiac mass QTL 41 | 2.73 | | Cardiac mass | | 2 | 24474447 | 212169089 | Rat | n/a | region | qtl |
| 1000 | 1358917 | Cm42 | Cardiac mass QTL 42 | 2.82 | | Cardiac mass | | 2 | 24474447 | 212169089 | Rat | n/a | region | qtl |
| 1000 | 1358908 | Bw49 | Body weight QTL 49 | 3.36 | | Body weight | | 2 | 24474676 | 163154227 | Rat | n/a | region | qtl |
| 1000 | 1358887 | Bw50 | Body weight QTL 50 | 2.39 | | Body weight | | 2 | 24474676 | 163154227 | Rat | n/a | region | qtl |
| 1000 | 61467 | Bp14 | Blood pressure QTL 14 | 2.2 | | Blood pressure | | 2 | 42866342 | 210636008 | Rat | n/a | region | qtl |
| 1000 | 1354601 | Slep1 | Serum leptin concentration QTL 1 | 5.39 | | Hormone level | leptin | 2 | 42882523 | 191378271 | Rat | n/a | region | qtl |
| 1000 | 631266 | Bp132 | Blood pressure QTL 132 | | .0005 | Blood pressure | systolic | 2 | 46542246 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1331760 | Bp206 | Blood pressure QTL 206 | 3.62454 | | Blood pressure | time series calculation | 2 | 56214854 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1298080 | Bp163 | Blood pressure QTL 163 | | .02 | Blood pressure | systolic | 2 | 66680022 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1354648 | Bp239 | Blood pressure QTL 239 | | .001 | Blood pressure | systolic | 2 | 66680209 | 235799396 | Rat | n/a | region | qtl |
| 1000 | 1558653 | Prcr1 | Prostate cancer resistance QTL 1 | 5 | | Prostate tumor resistance | lesion area ratio | 2 | 73374972 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1354605 | Rf48 | Renal function QTL 48 | 2.9 | | Creatinine level | serum | 2 | 75806326 | 214989298 | Rat | n/a | region | qtl |
| 1000 | 61374 | Edpm2 | Estrogen-dependent pituitary mass QTL 2 | 4.42 | .86 | Gland mass | pituitary | 2 | 77630629 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 724534 | Uae6 | Urinary albumin excretion QTL 6 | 10 | | Renal function | urine albumin level | 2 | 79796833 | 227150249 | Rat | n/a | region | qtl |
| 1000 | 1581569 | Uae32 | Urinary albumin excretion QTL 32 | | .0001 | Renal function | urine albumin level | 2 | 79796977 | 227150051 | Rat | n/a | region | qtl |
| 1000 | 1581576 | Pur7 | Proteinuria QTL 7 | | .0001 | Renal function | urine protein level | 2 | 79796977 | 227150051 | Rat | n/a | region | qtl |
| 1000 | 1354622 | Kidm16 | Kidney mass QTL 16 | 3 | | Kidney mass | left kidney mass | 2 | 82826122 | 231465091 | Rat | n/a | region | qtl |
| 1000 | 1354649 | Kidm17 | Kidney mass QTL 17 | 2.9 | | Kidney mass | left kidney mass adjujsted for tibia length | 2 | 82826122 | 236153712 | Rat | n/a | region | qtl |
| 1000 | 631507 | Bp105 | Blood pressure QTL 105 | | .001 | Blood pressure | | 2 | 116874922 | 221284686 | Rat | n/a | region | qtl |
| 1000 | 634308 | Sach6 | Saccharin preference QTL 6 | 4.9 | | Consumption level | saccharin preference | 2 | 116874922 | 221284686 | Rat | n/a | region | qtl |
| 1000 | 2293835 | Kiddil5 | Kidney dilation QTL 5 | 3.8 | | Renal pathology | kidney dilation | 2 | 118154358 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 1359030 | Bp277 | Blood pressure QTL 277 | | | Blood pressure | systolic | 2 | 118264490 | 163264490 | Rat | n/a | region | qtl |
| 1000 | 1578648 | Bss11 | Bone structure and strength QTL 11 | 4.7 | | Bone structure | femoral neck cortical area | 2 | 118264490 | 220244597 | Rat | n/a | region | qtl |
| 1000 | 1554319 | Bmd2 | Bone mineral density QTL 2 | 13.4 | .0001 | Bone mineral density | spine area by pQCT | 2 | 118264840 | 221131552 | Rat | n/a | region | qtl |
| 1000 | 1354594 | Despr10 | Despair related QTL 10 | | .00000249 | Activity level | climbing level | 2 | 119504072 | 164504072 | Rat | n/a | region | qtl |
| 1000 | 1582257 | Gluco21 | Glucose level QTL 21 | 3.1 | .0035 | Glucose level | uptake | 2 | 121545310 | 163154358 | Rat | n/a | region | qtl |
| 1000 | 738007 | Anxrr7 | Anxiety related response QTL 7 | 4.4 | | Anxiety response | open field inner locomotion | 2 | 123254875 | 168254875 | Rat | n/a | region | qtl |
| 1000 | 6907363 | Bp357 | Blood pressure QTL 357 | 2.4 | .002 | Blood pressure | diastolic | 2 | 136212270 | 181212270 | Rat | n/a | region | qtl |
| 1000 | 1300165 | Rf9 | Renal function QTL 9 | 3.28 | | Renal function | hypertension related glomerular damage | 2 | 138700979 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 70175 | BpQTLCluster3 | Blood pressure QTL cluster 3 | 2.76 | | Blood pressure | | 2 | 140403692 | 210636008 | Rat | n/a | region | qtl |
| 1000 | 1581502 | Esta3 | Estrogen-induced thymic atrophy QTL 3 | | | Gland mass | thymus | 2 | 141755026 | 197256313 | Rat | n/a | region | qtl |
| 1000 | 1359022 | Ppulsi1 | Prepulse inhibition QTL 1 | 3.63 | | Prepulse inhibition | | 2 | 141755026 | 222281918 | Rat | n/a | region | qtl |
| 1000 | 2293843 | Kiddil6 | Kidney dilation QTL 6 | 3.1 | | Renal pathology | kidney dilation | 2 | 144377723 | 189377723 | Rat | n/a | region | qtl |
| 1000 | 1331805 | Cm29 | Cardiac mass QTL 29 | 3.50746 | | Cardiac mass | | 2 | 146228221 | 232307864 | Rat | n/a | region | qtl |
| 1000 | 1331794 | Bp202 | Blood pressure QTL 202 | 3.66819 | | Blood pressure | systolic | 2 | 146228221 | 232307864 | Rat | n/a | region | qtl |
| 1000 | 71113 | Cari2 | Carrageenan-induced inflammation QTL 2 | 2.7 | .009 | Carrageenan-induced inflammation | | 2 | 146659370 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1581578 | Cm49 | Cardiac mass QTL 49 | 4.9 | .01 | Cardiac mass | left ventricle | 2 | 148790600 | 227150249 | Rat | n/a | region | qtl |
| 1000 | 6903312 | Bw112 | Body weight QTL 112 | 3.2 | .0013 | Body weight | | 2 | 148790758 | 191378142 | Rat | n/a | region | qtl |
| 1000 | 61401 | Niddm2 | Non-insulin dependent diabetes mellitus QTL 2 | 4.54 | | Glucose level | postprandial | 2 | 152256313 | 197256313 | Rat | n/a | region | qtl |
| 1000 | 631520 | Bp73 | Blood pressure QTL 73 | | .0001 | Blood pressure | systolic | 2 | 153031724 | 174727552 | Rat | n/a | region | qtl |
| 1000 | 1598833 | Bp295 | Blood pressure QTL 295 | 3.5 | | Blood pressure | systolic | 2 | 154238265 | 199238265 | Rat | n/a | region | qtl |
| 1000 | 1641925 | Alcrsp2 | Alcohol response QTL 2 | | | Alcohol response | loss of righting reflex | 2 | 155101972 | 230157845 | Rat | n/a | region | qtl |
| 1000 | 1641891 | Alcrsp17 | Alcohol response QTL 17 | | | Alcohol response | loss of righting reflex | 2 | 155101972 | 247295816 | Rat | n/a | region | qtl |
| 1000 | 1598805 | Memor8 | Memory QTL 8 | 3 | | Memory | navigation-spatial | 2 | 155920709 | 197555821 | Rat | n/a | region | qtl |
| 1000 | 631501 | Bp101 | Blood pressure QTL 101 | 2.4 | | Blood pressure | systolic | 2 | 155920808 | 210636008 | Rat | n/a | region | qtl |
| 1000 | 1354609 | Niddm62 | Non-insulin dependent diabetes mellitus QTL 62 | 4.72 | .000006 | Insulin level | post-pancreatectomy | 2 | 156142685 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 2301966 | Bp322 | Blood pressure QTL 322 | 3.58 | | Blood pressure | systolic | 2 | 156142685 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 2301415 | Cm67 | Cardiac mass QTL 67 | | .003 | Cardiac mass | aorta | 2 | 158146823 | 182740242 | Rat | n/a | region | qtl |