| 1000 | 1641893 | Alcrsp7 | Alcohol response QTL 7 | | | Alcohol response | loss of righting reflex | 20 | 1 | 27477794 | Rat | n/a | region | qtl |
| 1000 | 2317851 | Alcrsp22 | Alcohol response QTL 22 | 3.2 | .05 | Alcohol response | | 20 | 1 | 27477794 | Rat | n/a | region | qtl |
| 1000 | 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | .0024 | Colorectal carcinoma resistance | | 20 | 1 | 32560683 | Rat | n/a | region | qtl |
| 1000 | 6893685 | Bw111 | Body weight QTL 111 | 2.7 | .004 | Body weight | salt-loaded | 20 | 1 | 32910115 | Rat | n/a | region | qtl |
| 1000 | 2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | Glucose level | | 20 | 1616332 | 46616332 | Rat | n/a | region | qtl |
| 1000 | 2317057 | Aia27 | Adjuvant induced arthritis QTL 27 | 2.83 | | Joint/bone inflammation | adjuvant induced | 20 | 3039759 | 37383914 | Rat | n/a | region | qtl |
| 1000 | 1598816 | Memor12 | Memory QTL 12 | 2.4 | | Memory | navigation-spatial | 20 | 3055886 | 48055886 | Rat | n/a | region | qtl |
| 1000 | 1300152 | Bp195 | Blood pressure QTL 195 | 3.46 | | Blood pressure | salt-loaded systolic | 20 | 3660638 | 9534510 | Rat | n/a | region | qtl |
| 1000 | 1331772 | Cdexp2 | CD45RC expression in CD8 T cells QTL 2 | 5.7 | | CD8 T cell CD45RC expression level | | 20 | 3660638 | 10410227 | Rat | n/a | region | qtl |
| 1000 | 61432 | Cia1 | Collagen induced arthritis QTL 1 | | | Joint/bone inflammation | type II collagen induced | 20 | 3660646 | 14605852 | Rat | n/a | region | qtl |
| 1000 | 1558640 | Prcs2 | Prostate cancer susceptibility QTL 2 | 3.3 | | Prostate tumor susceptibility | lesions with ACI-type nuclei | 20 | 4740609 | 18411969 | Rat | n/a | region | qtl |
| 1000 | 4889857 | Pur27 | Proteinuria QTL 27 | 12.2 | .001 | Renal function | urine protein level | 20 | 4740609 | 18411969 | Rat | n/a | region | qtl |
| 1000 | 70154 | Insul2 | Insulin level QTL 2 | 3.75 | | Insulin level | post-pancreatectomy | 20 | 6880472 | 18245770 | Rat | n/a | region | qtl |
| 1000 | 1581577 | Pur15 | Proteinuria QTL 15 | 4.38 | .0002 | Renal function | urine protein level | 20 | 8286533 | 18411969 | Rat | n/a | region | qtl |
| 1000 | 4889870 | Pur30 | Proteinuria QTL 30 | 19 | .005 | Renal function | urine protein level | 20 | 8286533 | 28734502 | Rat | n/a | region | qtl |
| 1000 | 631265 | Iresp1 | Immunoglobin response QTL1 | 8.3 | | Anti-DNA antibody level | | 20 | 9301974 | 13963223 | Rat | n/a | region | qtl |