| 61408 | Scl23 | Serum cholesterol level QTL 23 | | .0005 | Lipid level | HDL phospholipid | 4 | 1 | 22959087 | Rat | n/a | region | qtl |
| 724557 | Plsm1 | Polydactyly-luxate syndrome (PLS) morphotypes QTL 1 | | .0003 | Limb morphology | front feet phalanges number | 4 | 1 | 22959087 | Rat | n/a | region | qtl |
| 61333 | Gluco16 | Glucose level QTL 16 | 4.3 | | Glucose level | uptake | 4 | 1 | 25671721 | Rat | n/a | region | qtl |
| 1641905 | Colcr1 | Colorectal carcinoma resistance QTL 1 | 4.3 | .0003 | Colorectal carcinoma resistance | | 4 | 1 | 26178440 | Rat | n/a | region | qtl |
| 1357343 | Gluco4 | Glucose level QTL 4 | 3.1 | | Glucose level | insulin-mediated glucose uptake | 4 | 1 | 28615362 | Rat | n/a | region | qtl |
| 738021 | Hcar13 | Hepatocarcinoma resistance QTL 13 | 4.3 | | Liver tumor resistance | volume fraction | 4 | 1 | 29414068 | Rat | n/a | region | qtl |
| 634323 | Hc2 | Hypercalciuria QTL 2 | 2.15 | | Renal function | calcium excretion | 4 | 1 | 41544239 | Rat | n/a | region | qtl |
| 619616 | Bp79 | Blood pressure QTL 79 | | .0292 | Blood pressure | systolic | 4 | 456799 | 78039637 | Rat | n/a | region | qtl |
| 2303168 | Bp330 | Blood pressure QTL 330 | 4.25 | .017 | Blood pressure | | 4 | 456799 | 149181446 | Rat | n/a | region | qtl |
| 2302371 | Stl22 | Serum triglyceride level QTL 22 | 5.15 | | Lipid level | triglyceride | 4 | 460493 | 55370202 | Rat | n/a | region | qtl |
| 1358203 | Stl19 | Serum triglyceride level QTL 19 | 2.8 | .002 | Lipid level | triglyceride | 4 | 460493 | 64750077 | Rat | n/a | region | qtl |
| 1358201 | Gluco12 | Glucose level QTL12 | 1.6 | | Glucose level | uptake | 4 | 460590 | 26280781 | Rat | n/a | region | qtl |
| 631642 | Stl2 | Serum triglyceride level QTL 2 | 3.3 | | Lipid level | triglyceride | 4 | 461376 | 54828069 | Rat | n/a | region | qtl |
| 631209 | Bw2 | Body weight QTL2 | 4.2 | | Body fat amount | retroperitoneal | 4 | 5351609 | 41729771 | Rat | n/a | region | qtl |
| 1300141 | Bp178 | Blood pressure QTL 178 | | | Blood pressure | salt-loaded mean arterial | 4 | 5437007 | 36612108 | Rat | n/a | region | qtl |
| 631261 | Tcas3 | Tongue tumor susceptibility QTL 3 | 6 | | Tongue tumor susceptibility | | 4 | 6179441 | 91330582 | Rat | n/a | region | qtl |
| 2316958 | Gluco58 | Glucose level QTL 58 | 10 | | Glucose level | postprandial | 4 | 6690606 | 185398530 | Rat | n/a | region | qtl |
| 6478724 | Anxrr35 | Anxiety related response QTL 35 | | .00449 | Anxiety response | | 4 | 6913861 | 51913861 | Rat | n/a | region | qtl |
| 6478766 | Anxrr47 | Anxiety related response QTL 47 | | .09637 | Anxiety response | open field inner locomotion | 4 | 6913861 | 51913861 | Rat | n/a | region | qtl |
| 6478769 | Anxrr48 | Anxiety related response QTL 48 | | .02514 | Anxiety response | response in light-dark box | 4 | 6913861 | 51913861 | Rat | n/a | region | qtl |
| 1358352 | Srcrt3 | Stress Responsive Cort QTL 3 | 2.29 | | Hypothalamic-pituitary-adrenal axis | corticosterone post-stress | 4 | 8819982 | 149560340 | Rat | n/a | region | qtl |
| 2303585 | Bw86 | Body weight QTL 86 | 4 | | Body weight | | 4 | 11706134 | 56706134 | Rat | n/a | region | qtl |
| 1300156 | Bp179 | Blood pressure QTL 179 | 2.85 | | Blood pressure | salt-loaded mean arterial | 4 | 15744638 | 36612108 | Rat | n/a | region | qtl |
| 70222 | Eae2 | Experimental allergic encephalomyelitis QTL 2 | 4.3 | | Brain/spinal cord inflammation | severity of disease | 4 | 17617956 | 36592773 | Rat | n/a | region | qtl |
| 1354665 | Stl10 | Serum triglyceride level QTL 10 | 3.57 | | Lipid level | triglyceride | 4 | 17617956 | 41729771 | Rat | n/a | region | qtl |
| 61412 | Pia2 | Pristane induced arthritis QTL 2 | 3.9 | | Joint/bone inflammation | day of onset | 4 | 17617956 | 60974511 | Rat | n/a | region | qtl |
| 6909122 | Insul22 | Insulin level QTL 22 | 4.63 | | Insulin level | fasting | 4 | 23537363 | 74625985 | Rat | n/a | region | qtl |
| 6909128 | Pancm4 | Pancreatic morphology QTL 4 | 11.35 | | Pancreas weight | | 4 | 23537363 | 74625985 | Rat | n/a | region | qtl |
| 61415 | Eae11 | Experimental allergic encephalomyelitis QTL 11 | 2.9 | | Brain/spinal cord inflammation | onset of disease | 4 | 32648616 | 36592773 | Rat | n/a | region | qtl |
| 2313401 | Anxrr27 | Anxiety related response QTL 27 | | | Anxiety response | domestication | 4 | 32648616 | 61646915 | Rat | n/a | region | qtl |
| 4889511 | Gluco61 | Glucose level QTL 61 | 4.7 | .001 | Glucose level | | 4 | 34206019 | 38029988 | Rat | n/a | region | qtl |
| 2290374 | Gluco32 | Glucose level QTL 32 | 6.27 | | Glucose level | fasting | 4 | 34206019 | 41729771 | Rat | n/a | region | qtl |
| 61475 | Aia2 | Adjuvant induced arthritis QTL 2 | 5.8 | | Joint/bone inflammation | arthritis severity | 4 | 36592628 | 73972591 | Rat | n/a | region | qtl |
| 1331807 | Rf31 | Renal function QTL 31 | 2.988 | | Renal function | urine potassium concentration | 4 | 36611842 | 73752590 | Rat | n/a | region | qtl |
| 1300139 | Hrtrt6 | Heart rate QTL 6 | 2.85 | | Heart rate | salt-loaded | 4 | 36611842 | 117887968 | Rat | n/a | region | qtl |
| 61445 | Strs3 | Sensitivity to stroke QTL 3 | 3 | | Stroke susceptibility | latency until stroke | 4 | 39146794 | 84146794 | Rat | n/a | region | qtl |
| 1576305 | Emca6 | Estrogen-induced mammary cancer QTL 6 | 5.8 | | Mammary tumor susceptibility | estradiol-induced | 4 | 41729583 | 159115617 | Rat | n/a | region | qtl |
| 1354612 | Foco1 | Food consumption QTL 1 | 8.87 | | Consumption level | food intake | 4 | 41729771 | 151158666 | Rat | n/a | region | qtl |
| 1354660 | Salc1 | Saline consumption QTL 1 | 11.26 | | Consumption level | saline intake | 4 | 41729771 | 151158666 | Rat | n/a | region | qtl |
| 6893678 | Bw108 | Body weight QTL 108 | 2.6 | .006 | Body weight | salt-loaded | 4 | 42249950 | 87249950 | Rat | n/a | region | qtl |
| 2312567 | Glom19 | Glomerulus QTL 19 | 1.9 | .006 | Renal pathology | | 4 | 43686352 | 149560340 | Rat | n/a | region | qtl |
| 1298082 | Stresp4 | Stress response QTL 4 | | | Hormone level | corticosterone | 4 | 47889730 | 149560340 | Rat | n/a | region | qtl |
| 4889969 | Bss96 | Bone structure and strength QTL 96 | 4.9 | | Bone structure | | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |
| 4889972 | Bss97 | Bone structure and strength QTL 97 | 5.6 | | Bone structure | | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |
| 5685009 | Bmd86 | Bone mineral density QTL 86 | 3.7 | | Bone mineral density | areal bone mineral density | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |
| 5685012 | Bmd87 | Bone mineral density QTL 87 | 5.1 | | Bone mineral density | bone mineral content | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |