| 1000 | 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | .0001 | Cardiac mass | | 1 | 81342810 | 225814178 | Rat | n/a | region | qtl |
| 1000 | 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | Blood pressure | systolic | 1 | 94624828 | 220639653 | Rat | n/a | region | qtl |
| 1000 | 1354606 | Bp246 | Blood pressure QTL 246 | 3.6 | | Blood pressure | pulse pressure | 1 | 103149923 | 224426393 | Rat | n/a | region | qtl |
| 1000 | 1600363 | Hc6 | Hypercalciuria QTL 6 | 2.7 | | Renal function | calcium excretion | 1 | 112148733 | 250430505 | Rat | n/a | region | qtl |
| 1000 | 1598853 | Memor3 | Memory QTL 3 | 4.5 | | Memory | navigation-spatial | 1 | 146189650 | 218467340 | Rat | n/a | region | qtl |
| 1000 | 737828 | Hcas3 | Hepatocarcinoma susceptibility QTL 3 | 4.9 | | Liver tumor susceptibility | nodule number | 1 | 146971846 | 228781113 | Rat | n/a | region | qtl |
| 1000 | 2302378 | Insul11 | Insulin level QTL 11 | 3.25 | | Insulin level | | 1 | 146971846 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 724531 | Uae5 | Urinary albumin excretion QTL 5 | 4 | | Renal function | urine albumin level | 1 | 153578442 | 259173490 | Rat | n/a | region | qtl |
| 1000 | 1354610 | Bw34 | Body weight QTL 34 | 4.1 | | Body weight | | 1 | 154074905 | 263699089 | Rat | n/a | region | qtl |
| 1000 | 1354646 | Kidm18 | Kidney mass QTL 18 | 5.7 | | Kidney mass | right kidney mass adjusted for body weight | 1 | 154074905 | 263699089 | Rat | n/a | region | qtl |
| 1000 | 1354661 | Bw33 | Body weight QTL 33 | 5.2 | | Body weight | | 1 | 154074905 | 263699089 | Rat | n/a | region | qtl |
| 1000 | 1358886 | Bp260 | Blood pressure QTL 260 | 3.67 | | Blood pressure | post nitric oxide system block | 1 | 154075310 | 231726050 | Rat | n/a | region | qtl |
| 1000 | 1549837 | Hcar15 | Hepatocarcinoma resistance QTL 15 | | .05 | Liver tumor resistance | 3-methyl-4-dimethylaminoazobenzene induced | 1 | 156124624 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 2312420 | Pur17 | Proteinuria QTL 17 | 7.1 | .0001 | Renal function | urine protein level | 1 | 159782445 | 224426393 | Rat | n/a | region | qtl |
| 1000 | 1354580 | Scort1 | Serum corticosterone level QTL 1 | 3.4 | | Hormone level | corticosterone | 1 | 159782445 | 263699089 | Rat | n/a | region | qtl |
| 1000 | 2292222 | Bp307 | Blood pressure QTL 307 | 3.06 | .0014 | Blood pressure | systolic | 1 | 167931220 | 219629888 | Rat | n/a | region | qtl |
| 1000 | 2292220 | Bp306 | Blood pressure QTL 306 | 3.47 | .00087 | Blood pressure | systolic | 1 | 167931220 | 250119874 | Rat | n/a | region | qtl |
| 1000 | 1354653 | Despr9 | Despair related QTL 9 | | .00019 | Activity level | climbing level | 1 | 172723568 | 217723568 | Rat | n/a | region | qtl |
| 1000 | 1358294 | Bw37 | Body weight QTL 37 | 5 | .000011 | Body weight | | 1 | 176292515 | 221292515 | Rat | n/a | region | qtl |
| 1000 | 2293654 | Bss30 | Bone structure and strength QTL 30 | 32.65 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 2293673 | Bss27 | Bone structure and strength QTL 27 | 18.63 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 2293677 | Bss41 | Bone structure and strength QTL 41 | 9.38 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 2293689 | Bss47 | Bone structure and strength QTL 47 | 7.25 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 2293693 | Bss22 | Bone structure and strength QTL 22 | 33.52 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 2300161 | Bmd43 | Bone mineral density QTL 43 | 8.4 | .0001 | Bone mineral density | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 2300174 | Bmd42 | Bone mineral density QTL 42 | 8.4 | .0001 | Bone mineral density | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 2300187 | Bmd41 | Bone mineral density QTL 41 | 8.9 | .0001 | Bone mineral density | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 1000 | 1549830 | Bss1 | Bone structure and strength QTL 1 | 4.8 | | Bone strength | Femoral ultimate force | 1 | 177666790 | 222666790 | Rat | n/a | region | qtl |
| 1000 | 70163 | Bw20 | Body weight QTL 20 | 5.1 | | Body weight | | 1 | 178054386 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 738032 | Hcas5 | Hepatocarcinoma susceptibility QTL 5 | 3.12 | | Liver tumor susceptibility | nodule number | 1 | 180678929 | 265343617 | Rat | n/a | region | qtl |
| 1000 | 1354624 | Cm35 | Cardiac mass QTL35 | 5.7 | | Cardiac mass | left ventricle adjusted for body weight | 1 | 181524849 | 263699089 | Rat | n/a | region | qtl |
| 1000 | 1354652 | Kidm20 | Kidney mass QTL 20 | 4.3 | | Kidney mass | left kidney mass adjusted for body weight | 1 | 181524849 | 263699089 | Rat | n/a | region | qtl |
| 1000 | 1600380 | Niddm70 | Non-insulin dependent diabetes mellitus QTL 70 | 3.1 | .0008 | Insulin level | | 1 | 181780342 | 226780342 | Rat | n/a | region | qtl |
| 1000 | 634321 | Hc1 | Hypercalciuria QTL 1 | 2.91 | | Renal function | calcium excretion | 1 | 183163129 | 248833756 | Rat | n/a | region | qtl |
| 1000 | 1578759 | Uae30 | Urinary albumin excretion QTL 30 | 3.3 | .003 | Renal function | urine albumin level | 1 | 183946692 | 267910886 | Rat | n/a | region | qtl |
| 1000 | 1578763 | Kidm29 | Kidney mass QTL 29 | 3.3 | .0001 | Kidney mass | | 1 | 183946692 | 267910886 | Rat | n/a | region | qtl |
| 1000 | 1558658 | Bw59 | Body weight QTL 59 | 3.5 | .0003 | Body weight | | 1 | 184074275 | 229074275 | Rat | n/a | region | qtl |
| 1000 | 1302787 | Stl25 | Serum triglyceride level QTL 25 | 2.7 | .0073 | Lipid level | triglyceride level | 1 | 184857716 | 216663271 | Rat | n/a | region | qtl |
| 1000 | 6903303 | Scl34 | Serum cholesterol QTL 34 | 2.5 | .0033 | Lipid level | cholesterol level | 1 | 184857716 | 223729371 | Rat | n/a | region | qtl |
| 1000 | 724559 | Pancm1 | Pancreatic morphology QTL 1 | 7.1 | | Pancreatic morphology | | 1 | 186391887 | 220639539 | Rat | n/a | region | qtl |
| 1000 | 2293083 | Iddm25 | Insulin dependent diabetes mellitus QTL 25 | 3.03 | | Glucose level | insulin-dependent | 1 | 186471692 | 230411453 | Rat | n/a | region | qtl |
| 1000 | 1300145 | Rf7 | Renal function QTL 7 | 2.96 | | Renal function | salt-loaded urine creatinine concentration | 1 | 189900686 | 227005733 | Rat | n/a | region | qtl |
| 1000 | 2312564 | Glom18 | Glomerulus QTL 18 | 2.4 | .003 | Renal pathology | | 1 | 190114247 | 238037551 | Rat | n/a | region | qtl |
| 1000 | 631837 | Niddm35 | Non-insulin dependent diabetes mellitus QTL 35 | | .01 | Insulin level | | 1 | 190677683 | 235677683 | Rat | n/a | region | qtl |
| 1000 | 1582206 | Kidm33 | Kidney mass QTL 33 | 6.9 | | Kidney mass | | 1 | 193069836 | 229876997 | Rat | n/a | region | qtl |
| 1000 | 1358898 | Bp255 | Blood pressure QTL 255 | 3.6 | | Blood pressure | post nitric oxide system block | 1 | 195927908 | 252497797 | Rat | n/a | region | qtl |
| 1000 | 1358191 | Ept10 | Estrogen-induced pituitary tumorigenesis QTL 10 | 3.8 | | Gland mass | pituitary | 1 | 197770157 | 250119666 | Rat | n/a | region | qtl |
| 1000 | 61455 | Niddm7 | Non-insulin dependent diabetes mellitus QTL 7 | 5.5 | | Glucose level | | 1 | 198139596 | 243139596 | Rat | n/a | region | qtl |
| 1000 | 634338 | Hcar4 | Hepatocarcinoma resistance QTL 4 | 4.6 | | Liver tumor resistance | 3-methyl-4-dimethylaminoazobenzene induced | 1 | 198396580 | 220639653 | Rat | n/a | region | qtl |
| 1000 | 634312 | Bp143 | Blood pressure QTL 143 | 3 | .0002 | Blood pressure | systolic | 1 | 198853034 | 225625256 | Rat | n/a | region | qtl |
| 1000 | 1600388 | Niddm67 | Non-insulin dependent diabetes mellitus QTL 67 | 5.84 | .000004 | Glucose level | | 1 | 200882874 | 264367394 | Rat | n/a | region | qtl |
| 1000 | 1600395 | Niddm69 | Non-insulin dependent diabetes mellitus QTL 69 | 4.14 | .0002 | Insulin level | | 1 | 200882874 | 264367394 | Rat | n/a | region | qtl |
| 1000 | 1600396 | Niddm68 | Non-insulin dependent diabetes mellitus QTL 68 | 4.97 | .0003 | Glucose level | | 1 | 200882874 | 264367394 | Rat | n/a | region | qtl |
| 1000 | 631658 | Cm7 | Cardiac mass QTL 7 | 5.32 | .0001 | Cardiac mass | aorta | 1 | 201920676 | 246920676 | Rat | n/a | region | qtl |
| 1000 | 1358292 | Cm37 | Cardiac mass QTL 37 | 6.2 | .00000081 | Cardiac mass | cardiac mass index | 1 | 201920676 | 246920676 | Rat | n/a | region | qtl |
| 1000 | 61345 | Rf1 | Renal disease susceptibility QTL 1 | 8.9 | | Renal function | urine protein excretion rate | 1 | 202322277 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 1600374 | Mcs17 | Mammary carcinoma susceptibility QTL 17 | 3 | | Mammary tumor susceptibility | | 1 | 202763018 | 247763018 | Rat | n/a | region | qtl |
| 1000 | 2302375 | Bw83 | Body weight QTL 83 | 4.87 | .0002 | Body weight | | 1 | 202790380 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 1641926 | Teswt2 | Testicular weight QTL 2 | 2.82 | | Testicular weight | | 1 | 202790380 | 247790380 | Rat | n/a | region | qtl |
| 1000 | 61376 | Bp42 | Blood pressure QTL 42 | 23.4 | | Blood pressure | | 1 | 202906624 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 1357335 | Bw39 | Body weight QTL 39 | 3.3 | | Body weight | | 1 | 202906624 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 1298084 | Thym4 | Thymus enlargement QTL 4 | 10.68 | | Gland mass | thymus | 1 | 202906624 | 247906624 | Rat | n/a | region | qtl |
| 1000 | 1331790 | Bp201 | Blood pressure QTL 201 | 3.127 | | Blood pressure | mean arterial | 1 | 203302907 | 230963799 | Rat | n/a | region | qtl |
| 1000 | 634313 | Niddm43 | Non-insulin dependent diabetes mellitus QTL 43 | | | Glucose level | | 1 | 204280278 | 267111153 | Rat | n/a | region | qtl |
| 1000 | 2292218 | Kidm35 | Kidney mass QTL 35 | | | Kidney mass | | 1 | 204621918 | 230411453 | Rat | n/a | region | qtl |
| 1000 | 2293655 | Bss36 | Bone structure and strength QTL 36 | 10.66 | .0001 | Bone strength | | 1 | 207376933 | 252376933 | Rat | n/a | region | qtl |
| 1000 | 2293674 | Bss39 | Bone structure and strength QTL 39 | 7.1 | .0001 | Bone strength | | 1 | 207376933 | 252376933 | Rat | n/a | region | qtl |
| 1000 | 2293694 | Bss38 | Bone structure and strength QTL 38 | 7.05 | .0001 | Bone strength | | 1 | 207376933 | 252376933 | Rat | n/a | region | qtl |
| 1000 | 2300175 | Bmd40 | Bone mineral density QTL 40 | 15.4 | .0001 | Bone mineral density | | 1 | 207376933 | 252376933 | Rat | n/a | region | qtl |
| 1000 | 61403 | Niddm4 | Non-insulin dependent diabetes mellitus QTL 4 | | | Glucose level | non-insulin-dependent | 1 | 212121314 | 240980321 | Rat | n/a | region | qtl |
| 1000 | 1357399 | Bw45 | Body weight QTL 45 | 3.05 | | Body weight | body mass index | 1 | 212121314 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 1357404 | Bw42 | Body weight QTL 42 | 4.49 | .0001 | Body weight | | 1 | 212121314 | 247322277 | Rat | n/a | region | qtl |