| 1000 | 71120 | Niddm21 | Non-insulin dependent diabetes mellitus QTL 21 | 3.73 | | Glucose level | postprandial | 8 | 3039822 | 61462321 | Rat | n/a | region | qtl |
| 1000 | 2317032 | Ginf2 | Gastrointestinal inflammation QTL 2 | 3.21 | .005 | Gastrointestinal inflammation | | 8 | 5914098 | 50914098 | Rat | n/a | region | qtl |
| 1000 | 2317036 | Livw3 | Liver weight QTL 3 | 2.43 | .01 | Liver weight | | 8 | 5914098 | 50914098 | Rat | n/a | region | qtl |
| 1000 | 2317048 | Ginf1 | Gastrointestinal inflammation QTL 1 | 3.52 | .005 | Gastrointestinal inflammation | gut score | 8 | 5914098 | 50914098 | Rat | n/a | region | qtl |
| 1000 | 2301416 | Bp315 | Blood pressure QTL 315 | | .008 | Blood pressure | mean arterial | 8 | 7408118 | 52408118 | Rat | n/a | region | qtl |
| 1000 | 1581557 | Eae16 | Experimental allergic encephalomyelitis QTL 16 | 3.8 | | Brain/spinal cord inflammation | demyelination | 8 | 8294860 | 115338082 | Rat | n/a | region | qtl |
| 1000 | 1354595 | Despr4 | Despair related QTL 4 | | .0036 | Activity level | immobility level | 8 | 9008612 | 54008612 | Rat | n/a | region | qtl |
| 1000 | 1354627 | Despr14 | Despair related QTL 14 | | .0056 | Activity level | swimming level | 8 | 9008612 | 54008612 | Rat | n/a | region | qtl |
| 1000 | 1598824 | Memor4 | Memory QTL 4 | 2.5 | | Memory | navigation-spatial | 8 | 9581132 | 56397678 | Rat | n/a | region | qtl |
| 1000 | 61353 | Bp35 | Blood pressure QTL 35 | | | Blood pressure | | 8 | 9581132 | 103685771 | Rat | n/a | region | qtl |
| 1000 | 1357398 | Slep3 | Serum leptin concentration QTL 3 | 3.43 | | Hormone level | leptin | 8 | 9581375 | 44484215 | Rat | n/a | region | qtl |
| 1000 | 2302367 | Slep5 | Serum leptin concentration QTL 5 | 3.43 | | Hormone level | leptin | 8 | 9581375 | 44484215 | Rat | n/a | region | qtl |
| 1000 | 2317030 | Wbc5 | White blood cell count QTL 5 | 3.21 | .005 | White blood cell count | | 8 | 10116155 | 55116155 | Rat | n/a | region | qtl |
| 1000 | 2317051 | Aia18 | Adjuvant induced arthritis QTL 18 | 2.42 | | Joint/bone inflammation | adjuvant induced | 8 | 10116155 | 55116155 | Rat | n/a | region | qtl |
| 1000 | 1558646 | Swd5 | Spike wave discharge measurement QTL 5 | 3.45 | .00036 | Spike wave discharge measurement | frequency | 8 | 16442230 | 61442230 | Rat | n/a | region | qtl |
| 1000 | 631271 | Cati1 | Cataract Ihara QTL 1 | | .001 | Cataract susceptibility | | 8 | 16468237 | 61468237 | Rat | n/a | region | qtl |
| 1000 | 731182 | Uae24 | Urinary albumin excretion QTL 24 | 6.4 | | Renal function | urine albumin level | 8 | 19815642 | 98451660 | Rat | n/a | region | qtl |
| 1000 | 631842 | Inf1 | Infertility severity QTL 1 | 4.1 | .001 | Seminal vesicle mass | | 8 | 26358063 | 71358063 | Rat | n/a | region | qtl |
| 1000 | 1359021 | Bp271 | Blood pressure QTL 271 | 1.8 | | Blood pressure | mean arterial | 8 | 27021985 | 49403011 | Rat | n/a | region | qtl |
| 1000 | 631648 | Stl5 | Serum triglyceride level QTL 5 | 4 | .0003 | Lipid level | triglyceride | 8 | 28414004 | 58991068 | Rat | n/a | region | qtl |
| 1000 | 1358892 | Kidm26 | Kidney mass QTL 26 | 3.69 | | Kidney mass | | 8 | 28414004 | 103684785 | Rat | n/a | region | qtl |
| 1000 | 1358896 | Bp262 | Blood pressure QTL 262 | 2.89 | | Blood pressure | post sympathetic nervous system block | 8 | 28414004 | 103684785 | Rat | n/a | region | qtl |
| 1000 | 1358907 | Cm40 | Cardiac mass QTL 40 | 1.89 | | Cardiac mass | | 8 | 28414004 | 103684785 | Rat | n/a | region | qtl |
| 1000 | 2303572 | Insul13 | Insulin level QTL 13 | 2 | | Insulin level | | 8 | 29077622 | 74077622 | Rat | n/a | region | qtl |
| 1000 | 2303564 | Gluco43 | Glucose level QTL 43 | 3 | | Glucose level | fasting | 8 | 29077622 | 74077622 | Rat | n/a | region | qtl |
| 1000 | 1300146 | Rf17 | Renal function QTL 17 | 2.9 | | Renal function | salt-loaded renal blood flow | 8 | 29559446 | 74559446 | Rat | n/a | region | qtl |
| 1000 | 1331804 | Cm30 | Cardiac mass QTL 30 | 3.77443 | | Cardiac mass | | 8 | 29559446 | 103672447 | Rat | n/a | region | qtl |
| 1000 | 2302278 | Gluco36 | Glucose level QTL 36 | 4.2 | | Glucose level | | 8 | 30878636 | 53049477 | Rat | n/a | region | qtl |
| 1000 | 724514 | Uae15 | Urinary albumin excretion QTL 15 | 2.9 | | Renal function | urine albumin level | 8 | 30878636 | 74178909 | Rat | n/a | region | qtl |
| 1000 | 1549908 | Neudeg1 | Neurodegradation QTL 1 | 5 | 0 | Neurodegradation | motoneuron cell number | 8 | 31508524 | 98947320 | Rat | n/a | region | qtl |
| 1000 | 70206 | Alc20 | Alcohol consumption QTL 20 | 2 | | Consumption level | alcohol preference | 8 | 32203394 | 43314410 | Rat | n/a | region | qtl |
| 1000 | 61337 | Bp22 | Blood pressure QTL 22 | 5.1 | | Blood pressure | salt-loaded systolic | 8 | 32203394 | 45291808 | Rat | n/a | region | qtl |
| 1000 | 1331744 | Bp217 | Blood pressure QTL 217 | 3.398 | | Blood pressure | systolic | 8 | 32203394 | 61853629 | Rat | n/a | region | qtl |
| 1000 | 1359033 | Bp273 | Blood pressure QTL 273 | | | Blood pressure | response to intrathecal cytisine | 8 | 32203394 | 64762616 | Rat | n/a | region | qtl |
| 1000 | 2313046 | Bss78 | Bone structure and strength QTL 78 | 3.5 | .0001 | Bone strength | | 8 | 32203394 | 86628010 | Rat | n/a | region | qtl |
| 1000 | 2313057 | Bss76 | Bone structure and strength QTL 76 | 3 | .0001 | Bone structure | | 8 | 32203394 | 86628010 | Rat | n/a | region | qtl |
| 1000 | 2313067 | Bss77 | Bone structure and strength QTL 77 | 3.1 | .0001 | Bone structure | | 8 | 32203394 | 86628010 | Rat | n/a | region | qtl |
| 1000 | 2313088 | Bss75 | Bone structure and strength QTL 75 | 3.1 | .0001 | Bone structure | | 8 | 32203394 | 86628010 | Rat | n/a | region | qtl |
| 1000 | 724540 | Uae8 | Urinary albumin excretion QTL 8 | 5 | | Renal function | urine abumin level | 8 | 32203394 | 98986263 | Rat | n/a | region | qtl |
| 1000 | 1578755 | Pur5 | Proteinuria QTL 5 | 3.3 | .0001 | Renal function | urine protein level | 8 | 32203394 | 98986263 | Rat | n/a | region | qtl |
| 1000 | 1578765 | Klgr1 | Kidney lesion grade QTL 1 | 3.3 | .0001 | Renal histology | kidney lesion grade | 8 | 32203499 | 98986085 | Rat | n/a | region | qtl |
| 1000 | 1578769 | Uae31 | Urinary albumin excretion QTL 31 | 3.3 | .001 | Renal function | urine albumin level | 8 | 32203499 | 98986085 | Rat | n/a | region | qtl |
| 1000 | 2316950 | Scl66 | Serum cholesterol level QTL 66 | 4.1 | | Lipid level | serum cholesterol | 8 | 32203499 | 110106272 | Rat | n/a | region | qtl |
| 1000 | 1298065 | Scl16 | Serum cholesterol level QTL 16 | 3.8 | | Lipid level | cholesterol | 8 | 33897608 | 78897608 | Rat | n/a | region | qtl |
| 1000 | 1582222 | Epfw2 | Epididymal fat weight QTL 2 | 3.2 | .0005 | Epididymal fat weight | | 8 | 34808657 | 79808657 | Rat | n/a | region | qtl |