| 1000 | 4141612 | Cia40_m | collagen induced arthritis 40 (mouse) | | | Not determined | | 11 | 53988346 | 117993212 | Mouse | n/a | region | qtl |
| 1000 | 4142121 | Tmc1m2_m | Tmc1 modifier 2 (mouse) | | | Not determined | | 11 | 56786703 | 114128445 | Mouse | n/a | region | qtl |
| 1000 | 1300765 | Bbaa4_m | B.burgdorferi-associated arthritis 4 (mouse) | | | Not determined | | 11 | 66403911 | 100404032 | Mouse | n/a | region | qtl |
| 1000 | 1301030 | Bw4_m | body weight QTL 4 (mouse) | | | Not determined | | 11 | 66403911 | 100404032 | Mouse | n/a | region | qtl |
| 1000 | 1300784 | Prdt3_m | prion disease incubation time 3 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 1357766 | Si5lq6_m | serum IGFBP-5 level QTL 6 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 1301546 | Pcir2_m | periosteal circumference 2 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 1301833 | Tbbmd5_m | total body bone mineral density 5 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 4141264 | Qbis3_m | QTL for body weight independent of sex 3 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 4141767 | Kwq15_m | kidney weight QTL 15 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 4142191 | Lwq9_m | liver weight QTL 9 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 1300628 | Lgth6_m | body length 6 (mouse) | | | Not determined | | 11 | 66656096 | 100656328 | Mouse | n/a | region | qtl |
| 1000 | 1301161 | Slthsr_m | semilethal sex-restricted (mouse) | | | Not determined | | 11 | 67654000 | 101654138 | Mouse | n/a | region | qtl |
| 1000 | 1357580 | Pltct2_m | platelet count 2 (mouse) | | | Not determined | | 11 | 69874328 | 103874451 | Mouse | n/a | region | qtl |
| 1000 | 1302124 | Eae7_m | susceptibility to experimental allergic encephalomyelitis 7 (mouse) | | | Not determined | | 11 | 69874328 | 103874451 | Mouse | n/a | region | qtl |
| 1000 | 4141339 | Nilac2_m | nicotine induced locomotor activity 2 (mouse) | | | Not determined | | 11 | 70613874 | 104614042 | Mouse | n/a | region | qtl |
| 1000 | 1301681 | Sle13_m | systematic lupus erythematosus susceptibility 13 (mouse) | | | Not determined | | 11 | 70613874 | 104614042 | Mouse | n/a | region | qtl |
| 1000 | 1300651 | Pcyts3_m | plasmacytoma susceptibility 3 (mouse) | | | Not determined | | 11 | 70613874 | 104614042 | Mouse | n/a | region | qtl |
| 1000 | 1558812 | Rafar_m | retinoic acid induced forelimb autopod reduction (mouse) | | | Not determined | | 11 | 70613874 | 104614042 | Mouse | n/a | region | qtl |
| 1000 | 1300957 | Pbd1_m | peak bone density 1 (mouse) | | | Not determined | | 11 | 71990137 | 105990222 | Mouse | n/a | region | qtl |
| 1000 | 1301404 | Sbmd4_m | spinal bone mineral density 4 (mouse) | | | Not determined | | 11 | 71990137 | 105990222 | Mouse | n/a | region | qtl |
| 1000 | 1301654 | Aliq1_m | acute lung injury QTL 1 (mouse) | | | Not determined | | 11 | 72696613 | 106696777 | Mouse | n/a | region | qtl |
| 1000 | 1301310 | Tmevd5_m | Theiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse) | | | Not determined | | 11 | 72696613 | 106696777 | Mouse | n/a | region | qtl |
| 1000 | 1558996 | Bomd7_m | bone mineral density 7 (mouse) | | | Not determined | | 11 | 72696613 | 106696777 | Mouse | n/a | region | qtl |
| 1000 | 4142348 | Pstc2_m | periosteal circumference 2 (mouse) | | | Not determined | | 11 | 72789103 | 106789221 | Mouse | n/a | region | qtl |
| 1000 | 1357551 | Stzid_m | streptozotocin induced diabetes susceptibility (mouse) | | | Not determined | | 11 | 73114273 | 107114396 | Mouse | n/a | region | qtl |
| 1000 | 1301414 | Heal10_m | wound healing/regeneration 10 (mouse) | | | Not determined | | 11 | 77407671 | 111407810 | Mouse | n/a | region | qtl |
| 1000 | 4141332 | Azdm5_m | Alzheimer's disease modifier 5 (mouse) | | | Not determined | | 11 | 77407671 | 111407810 | Mouse | n/a | region | qtl |
| 1000 | 1301535 | Pas5b_m | pulmonary adenoma susceptibility 5b (mouse) | | | Not determined | | 11 | 79146953 | 113147090 | Mouse | n/a | region | qtl |
| 1000 | 1301038 | C10bw3_m | castaneus 10 week body weight 3 (mouse) | | | Not determined | | 11 | 79868181 | 113868314 | Mouse | n/a | region | qtl |
| 1000 | 1301153 | Estq3_m | estradiol regulated response QTL 3 (mouse) | | | Not determined | | 11 | 79868181 | 113868314 | Mouse | n/a | region | qtl |
| 1000 | 4142145 | Wg7_m | weight gain in high growth mice 7 (mouse) | | | Not determined | | 11 | 79868181 | 113868314 | Mouse | n/a | region | qtl |
| 1000 | 4142072 | Brwq1_m | brain weight QTL 1 (mouse) | | | Not determined | | 11 | 79868181 | 113868314 | Mouse | n/a | region | qtl |
| 1000 | 1300766 | Skull16_m | skull morphology 16 (mouse) | | | Not determined | | 11 | 81544969 | 115545124 | Mouse | n/a | region | qtl |
| 1000 | 1301313 | Pas5a_m | pulmonary adenoma susceptibility 5a (mouse) | | | Not determined | | 11 | 81544969 | 115545124 | Mouse | n/a | region | qtl |
| 1000 | 1558999 | Ethm4_m | ethanol induced thermoregulation 4 (mouse) | | | Not determined | | 11 | 81544969 | 115545124 | Mouse | n/a | region | qtl |
| 1000 | 1300649 | Crhq1_m | compensatory renal hypertrophy QTL 1 (mouse) | | | Not determined | | 11 | 81544969 | 115545124 | Mouse | n/a | region | qtl |
| 1000 | 4141508 | Tailq8_m | tail length QTL 8 (mouse) | | | Not determined | | 11 | 82348186 | 116348308 | Mouse | n/a | region | qtl |
| 1000 | 1301072 | Eae22_m | experimental allergic encephalomyelitis 22 (mouse) | | | Not determined | | 11 | 82348186 | 116348308 | Mouse | n/a | region | qtl |
| 1000 | 1301291 | Szs3_m | seizure susceptibility 3 (mouse) | | | Not determined | | 11 | 91344176 | 125344325 | Mouse | n/a | region | qtl |
| 1000 | 1558753 | Ath19_m | atherosclerosis 19 (mouse) | | | Not determined | | 11 | 91575096 | 125575220 | Mouse | n/a | region | qtl |
| 1000 | 1302034 | Pkccl_m | protein kinase C content in lungs (mouse) | | | Not determined | | 11 | 91575096 | 125575220 | Mouse | n/a | region | qtl |
| 1000 | 1357846 | Tilss2_m | TNF-induced lethal shock susceptibility 2 (mouse) | | | Not determined | | 11 | 91575096 | 125575220 | Mouse | n/a | region | qtl |
| 1000 | 1357810 | Manln12_m | mandible length 12 (mouse) | | | Not determined | | 11 | 91575096 | 125575220 | Mouse | n/a | region | qtl |
| 1000 | 1301095 | El6_m | epilepsy 6 (mouse) | | | Not determined | | 11 | 93199671 | 127199779 | Mouse | n/a | region | qtl |
| 1000 | 4141939 | Pregq2_m | pregnancy QTL 2 (mouse) | | | Not determined | | 11 | 94034267 | 117993212 | Mouse | n/a | region | qtl |
| 1000 | 1300944 | Alcp20_m | alcohol preference locus 20 (mouse) | | | Not determined | | 11 | 95374453 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 1301958 | Alcp18_m | alcohol preference locus 18 (mouse) | | | Not determined | | 11 | 95374453 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 4141090 | Etax10_m | ethanol induced ataxia 10 (mouse) | | | Not determined | | 11 | 96028359 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 1300962 | Cd8mts4_m | CD8 memory T cell subset 4 (mouse) | | | Not determined | | 11 | 96108162 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 1301057 | Nidd4_m | non-insulin-dependent diabetes mellitus 4 (mouse) | | | Not determined | | 11 | 96780624 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 1559010 | Nsila8_m | novelty/stress induced locomotor activation 8 (mouse) | | | Not determined | | 11 | 96955231 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 4141898 | Gfpq1_m | gonadal fat pad weight QTL 1 (mouse) | | | Not determined | | 11 | 97084818 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 4141168 | Secia6_m | small effect CIA locus 6 (mouse) | | | Not determined | | 11 | 97991785 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 1301983 | Berr2_m | berghei resistance locus 2 (mouse) | | | Not determined | | 11 | 98323097 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 4141946 | Wght5_m | weight 5 (mouse) | | | Not determined | | 11 | 98323097 | 128756704 | Mouse | n/a | region | qtl |
| 1000 | 1558975 | Marq3_m | methamphetamine response QTL 3 (mouse) | | | Not determined | | 11 | 98323097 | 128756704 | Mouse | n/a | region | qtl |