| 1000 | 631688 | Hcas2 | Hepatocarcinoma susceptibility QTL 2 | 3 | .0001 | Liver tumor susceptibility | nodule number | 1 | 6253946 | 116153262 | Rat | n/a | region | qtl |
| 1000 | 631495 | Bp96 | Blood pressure QTL 96 | 4.52 | | Blood pressure | systolic | 1 | 22842898 | 102532417 | Rat | n/a | region | qtl |
| 1000 | 1358359 | Sradr1 | Stress Responsive Adrenal Weight QTL 1 | 4.74 | | Hypothalamic-pituitary-adrenal axis | adrenal gland weight | 1 | 28716493 | 124749065 | Rat | n/a | region | qtl |
| 1000 | 2313051 | Bss57 | Bone structure and strength QTL 57 | 3.7 | .0001 | Bone strength | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 2313059 | Bss55 | Bone structure and strength QTL 55 | 3.2 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 2313072 | Bss53 | Bone structure and strength QTL 53 | 4.3 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 2313078 | Bss54 | Bone structure and strength QTL 54 | 3.5 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 2313094 | Bss58 | Bone structure and strength QTL 58 | 3.7 | .0001 | Bone strength | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 2313098 | Bmd70 | Bone mineral density QTL 70 | 3.6 | .0001 | Bone mineral density | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 2313099 | Bss56 | Bone structure and strength QTL 56 | 2.4 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 2313402 | Anxrr24 | Anxiety related response QTL 24 | | | Anxiety response | domestication | 1 | 43426139 | 146971983 | Rat | n/a | region | qtl |
| 1000 | 1578654 | Bss10 | Bone structure and strength QTL 10 | 4 | | Bone structure | femoral neck cortical area | 1 | 43872710 | 162735928 | Rat | n/a | region | qtl |
| 1000 | 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | Glucose level | | 1 | 43872827 | 204280278 | Rat | n/a | region | qtl |
| 1000 | 2298545 | Neuinf8 | Neuroinflammation QTL 8 | 2.9 | | Neuroinflammation | | 1 | 55083934 | 154002647 | Rat | n/a | region | qtl |
| 1000 | 2300324 | Fetw1 | Fetal weight QTL 1 | 12.1 | .005 | Fetal weight | | 1 | 55540384 | 100540384 | Rat | n/a | region | qtl |
| 1000 | 2300164 | Bmd44 | Bone mineral density QTL 44 | 5.4 | .0001 | Bone mineral density | | 1 | 56601368 | 101601368 | Rat | n/a | region | qtl |
| 1000 | 1300121 | Hrtrt1 | Heart rate QTL 1 | 3.7 | | Heart rate | salt-loaded | 1 | 64744882 | 116153262 | Rat | n/a | region | qtl |
| 1000 | 1549903 | Bp267 | Blood pressure QTL 267 | | | Blood pressure | systolic, nighttime | 1 | 77541583 | 106445306 | Rat | n/a | region | qtl |
| 1000 | 1582234 | Gluco18 | Glucose level QTL 18 | 3.4 | .0003 | Glucose level | uptake | 1 | 79749065 | 124749065 | Rat | n/a | region | qtl |
| 1000 | 4889494 | Scort2 | Serum corticosterone level QTL 2 | 4.2 | | Hormone level | corticosterone | 1 | 80851478 | 125851478 | Rat | n/a | region | qtl |
| 1000 | 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | .0001 | Cardiac mass | | 1 | 81342810 | 225814178 | Rat | n/a | region | qtl |
| 1000 | 2313083 | Bmd74 | Bone mineral density QTL 74 | 4 | .0001 | Bone mineral density | | 1 | 81947770 | 119780561 | Rat | n/a | region | qtl |
| 1000 | 631519 | Pia11 | Pristane induced arthritis QTL 11 | 5.3 | | Joint/bone inflammation | arthritis severity | 1 | 83489176 | 186472032 | Rat | n/a | region | qtl |
| 1000 | 738022 | Anxrr13 | Anxiety related response QTL 13 | 4.6 | .00039 | Anxiety response | open field inner locomotion | 1 | 83945235 | 128945235 | Rat | n/a | region | qtl |
| 1000 | 724529 | Cm16 | Cardiac mass QTL 16 | 2.7 | | Cardiac mass | | 1 | 87465281 | 153578547 | Rat | n/a | region | qtl |
| 1000 | 1358902 | Bw47 | Body weight QTL 47 | 1.67 | | Body weight | | 1 | 90282040 | 184857893 | Rat | n/a | region | qtl |
| 1000 | 724521 | Uae1 | Urinary albumin excretion QTL 1 | 3.8 | .0001 | Renal function | urine albumin level | 1 | 90282040 | 185923619 | Rat | n/a | region | qtl |
| 1000 | 1302788 | Scl19 | Serum cholesterol QTL 19 | 4.6 | .001 | Lipid level | cholesterol level | 1 | 90306033 | 124749065 | Rat | n/a | region | qtl |
| 1000 | 1300153 | Bp171 | Blood pressure QTL 171 | 3.37 | | Blood pressure | salt-loaded diastolic | 1 | 90448902 | 145865373 | Rat | n/a | region | qtl |
| 1000 | 724567 | Tcas6 | Tongue tumor susceptibility QTL 6 | 6.85 | | Tongue tumor susceptibility | | 1 | 92101613 | 146971983 | Rat | n/a | region | qtl |
| 1000 | 2293142 | Bp314 | Blood pressure QTL 314 | | | Blood pressure | systolic | 1 | 94471673 | 139471673 | Rat | n/a | region | qtl |
| 1000 | 1331800 | Scl25 | Serum cholesterol level QTL 25 | 3.013 | | Lipid level | cholesterol | 1 | 94473940 | 134980682 | Rat | n/a | region | qtl |
| 1000 | 1331793 | Bp200 | Blood pressure QTL 200 | 3.71601 | | Blood pressure | systolic | 1 | 94473940 | 176855135 | Rat | n/a | region | qtl |
| 1000 | 1331751 | Bp199 | Blood pressure QTL 199 | 3.60022 | | Blood pressure | diastolic | 1 | 94473940 | 186472032 | Rat | n/a | region | qtl |
| 1000 | 1331749 | Hrtrt11 | Heart rate QTL 11 | 2.973 | | Heart rate | | 1 | 94473940 | 203303100 | Rat | n/a | region | qtl |
| 1000 | 70209 | Niddm23 | Non-insulin dependent diabetes mellitus QTL 23 | 2.82 | | Glucose level | fasting | 1 | 94473940 | 203416143 | Rat | n/a | region | qtl |
| 1000 | 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | Blood pressure | systolic | 1 | 94624828 | 220639653 | Rat | n/a | region | qtl |