| 631205 | Bp196 | Blood pressure QTL 196 | 4 | .0001 | Blood pressure | mean arterial | 1 | 119780561 | 204280278 | Rat | n/a | region | qtl |
| 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | Glucose level | | 1 | 43872827 | 204280278 | Rat | n/a | region | qtl |
| 631544 | Bp84 | Blood pressure QTL 84 | 5.6 | | Blood pressure | systolic | 1 | 124614679 | 186391887 | Rat | n/a | region | qtl |
| 1558658 | Bw59 | Body weight QTL 59 | 3.5 | .0003 | Body weight | | 1 | 184074275 | 229074275 | Rat | n/a | region | qtl |
| 1358294 | Bw37 | Body weight QTL 37 | 5 | .000011 | Body weight | | 1 | 176292515 | 221292515 | Rat | n/a | region | qtl |
| 1354661 | Bw33 | Body weight QTL 33 | 5.2 | | Body weight | | 1 | 154074905 | 263699089 | Rat | n/a | region | qtl |
| 1354610 | Bw34 | Body weight QTL 34 | 4.1 | | Body weight | | 1 | 154074905 | 263699089 | Rat | n/a | region | qtl |
| 1354602 | Bw35 | Body weight QTL 35 | 12.2 | | Body weight | | 1 | 154074905 | 206567907 | Rat | n/a | region | qtl |
| 70163 | Bw20 | Body weight QTL 20 | 5.1 | | Body weight | | 1 | 178054386 | 247322277 | Rat | n/a | region | qtl |
| 631549 | Bp89 | Blood pressure QTL 89 | 5.7 | | Blood pressure | | 1 | 124614852 | 206574205 | Rat | n/a | region | qtl |
| 61341 | Bp26 | Blood pressure QTL 26 | | | Blood pressure | | 1 | 146971846 | 202915231 | Rat | n/a | region | qtl |
| 61343 | Bp28 | Blood pressure QTL 28 | | | Blood pressure | systolic | 1 | 155568068 | 200568068 | Rat | n/a | region | qtl |
| 70160 | Bw18 | Body weight QTL 18 | 5.7 | | Body weight | | 1 | 146971846 | 201472944 | Rat | n/a | region | qtl |
| 724562 | Rends1 | Renal damage susceptibility QTL 1 | | .05 | Renal histology | renal lesion severity | 1 | 146971846 | 202915231 | Rat | n/a | region | qtl |
| 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | Blood pressure | systolic | 1 | 94624828 | 220639653 | Rat | n/a | region | qtl |
| 634321 | Hc1 | Hypercalciuria QTL 1 | 2.91 | | Renal function | calcium excretion | 1 | 183163129 | 248833756 | Rat | n/a | region | qtl |
| 724531 | Uae5 | Urinary albumin excretion QTL 5 | 4 | | Renal function | urine albumin level | 1 | 153578442 | 259173490 | Rat | n/a | region | qtl |
| 724550 | Thym3 | Thymus enlargement QTL 3 | 7.82 | .001 | Gland mass | thymus | 1 | 141471946 | 186471946 | Rat | n/a | region | qtl |
| 737828 | Hcas3 | Hepatocarcinoma susceptibility QTL 3 | 4.9 | | Liver tumor susceptibility | nodule number | 1 | 146971846 | 228781113 | Rat | n/a | region | qtl |
| 738032 | Hcas5 | Hepatocarcinoma susceptibility QTL 5 | 3.12 | | Liver tumor susceptibility | nodule number | 1 | 180678929 | 265343617 | Rat | n/a | region | qtl |
| 61348 | Bp30 | Blood pressure QTL 30 | 2.4 | | Blood pressure | salt-loaded systolic | 1 | 153220905 | 202915231 | Rat | n/a | region | qtl |
| 619614 | Bp78 | Blood pressure QTL 78 | | .001 | Blood pressure | | 1 | 172926151 | 202350882 | Rat | n/a | region | qtl |
| 61326 | Eae6 | Experimental allergic encephalomyelitis QTL 6 | 5.3 | | Brain/spinal cord inflammation | change in body weight | 1 | 176854992 | 186472032 | Rat | n/a | region | qtl |
| 1354618 | Kidm15 | Kidney mass QTL 15 | 5 | | Kidney mass | left kidney mass | 1 | 159782445 | 206567907 | Rat | n/a | region | qtl |
| 70209 | Niddm23 | Non-insulin dependent diabetes mellitus QTL 23 | 2.82 | | Glucose level | fasting | 1 | 94473940 | 203416143 | Rat | n/a | region | qtl |
| 1300158 | Bp173 | Blood pressure QTL 173 | 3.48 | | Blood pressure | salt-loaded time series calculation | 1 | 115946374 | 189900838 | Rat | n/a | region | qtl |
| 1354580 | Scort1 | Serum corticosterone level QTL 1 | 3.4 | | Hormone level | corticosterone | 1 | 159782445 | 263699089 | Rat | n/a | region | qtl |
| 1354606 | Bp246 | Blood pressure QTL 246 | 3.6 | | Blood pressure | pulse pressure | 1 | 103149923 | 224426393 | Rat | n/a | region | qtl |
| 1354652 | Kidm20 | Kidney mass QTL 20 | 4.3 | | Kidney mass | left kidney mass adjusted for body weight | 1 | 181524849 | 263699089 | Rat | n/a | region | qtl |
| 1354653 | Despr9 | Despair related QTL 9 | | .00019 | Activity level | climbing level | 1 | 172723568 | 217723568 | Rat | n/a | region | qtl |
| 1354620 | Kidm19 | Kidney mass QTL 19 | 4 | | Kidney mass | left kidney mass adjusted for tibia length | 1 | 154074905 | 206567907 | Rat | n/a | region | qtl |
| 1354624 | Cm35 | Cardiac mass QTL35 | 5.7 | | Cardiac mass | left ventricle adjusted for body weight | 1 | 181524849 | 263699089 | Rat | n/a | region | qtl |
| 1354591 | Cm36 | Cardiac mass QTL 36 | 4.1 | | Cardiac mass | left ventricle adjusted for tibia length | 1 | 103149923 | 206567907 | Rat | n/a | region | qtl |
| 1354634 | Kidm12 | Kidney mass QTL 12 | 3.9 | | Kidney mass | right kidney mass | 1 | 154074905 | 206567907 | Rat | n/a | region | qtl |
| 1354615 | Cm32 | Cardiac mass QTL 32 | 5.2 | | Cardiac mass | left ventricle | 1 | 103149923 | 206567907 | Rat | n/a | region | qtl |
| 1331749 | Hrtrt11 | Heart rate QTL 11 | 2.973 | | Heart rate | | 1 | 94473940 | 203303100 | Rat | n/a | region | qtl |
| 1331751 | Bp199 | Blood pressure QTL 199 | 3.60022 | | Blood pressure | diastolic | 1 | 94473940 | 186472032 | Rat | n/a | region | qtl |
| 1358189 | Cstrr1 | Cold stress response QTL 1 | | .0001 | Hormone level | norepinephrine | 1 | 124614679 | 187092492 | Rat | n/a | region | qtl |
| 1354636 | Lmblg1 | Limb length QTL 1 | 6.4 | | Limb morphology | tibia length | 1 | 154074905 | 206567907 | Rat | n/a | region | qtl |
| 1354646 | Kidm18 | Kidney mass QTL 18 | 5.7 | | Kidney mass | right kidney mass adjusted for body weight | 1 | 154074905 | 263699089 | Rat | n/a | region | qtl |
| 1358886 | Bp260 | Blood pressure QTL 260 | 3.67 | | Blood pressure | post nitric oxide system block | 1 | 154075310 | 231726050 | Rat | n/a | region | qtl |
| 1549837 | Hcar15 | Hepatocarcinoma resistance QTL 15 | | .05 | Liver tumor resistance | 3-methyl-4-dimethylaminoazobenzene induced | 1 | 156124624 | 247322277 | Rat | n/a | region | qtl |
| 2312420 | Pur17 | Proteinuria QTL 17 | 7.1 | .0001 | Renal function | urine protein level | 1 | 159782445 | 224426393 | Rat | n/a | region | qtl |
| 2312558 | Glom17 | Glomerulus QTL 17 | 3.9 | .001 | Renal pathology | glomerular injury score | 1 | 170218208 | 201628746 | Rat | n/a | region | qtl |
| 1598853 | Memor3 | Memory QTL 3 | 4.5 | | Memory | navigation-spatial | 1 | 146189650 | 218467340 | Rat | n/a | region | qtl |
| 1578759 | Uae30 | Urinary albumin excretion QTL 30 | 3.3 | .003 | Renal function | urine albumin level | 1 | 183946692 | 267910886 | Rat | n/a | region | qtl |
| 1578763 | Kidm29 | Kidney mass QTL 29 | 3.3 | .0001 | Kidney mass | | 1 | 183946692 | 267910886 | Rat | n/a | region | qtl |
| 1578770 | Stresp23 | Stress response QTL 23 | | | Stress response | sympathetic hyperreactivity to air-jet stress | 1 | 124614679 | 187092492 | Rat | n/a | region | qtl |
| 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | .0001 | Cardiac mass | | 1 | 81342810 | 225814178 | Rat | n/a | region | qtl |
| 1641895 | Bp298 | Blood pressure QTL 298 | | | Blood pressure | mean arterial | 1 | 124614679 | 187092492 | Rat | n/a | region | qtl |
| 2293693 | Bss22 | Bone structure and strength QTL 22 | 33.52 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2293654 | Bss30 | Bone structure and strength QTL 30 | 32.65 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2292220 | Bp306 | Blood pressure QTL 306 | 3.47 | .00087 | Blood pressure | systolic | 1 | 167931220 | 250119874 | Rat | n/a | region | qtl |
| 2292222 | Bp307 | Blood pressure QTL 307 | 3.06 | .0014 | Blood pressure | systolic | 1 | 167931220 | 219629888 | Rat | n/a | region | qtl |
| 1600363 | Hc6 | Hypercalciuria QTL 6 | 2.7 | | Renal function | calcium excretion | 1 | 112148733 | 250430505 | Rat | n/a | region | qtl |
| 1600380 | Niddm70 | Non-insulin dependent diabetes mellitus QTL 70 | 3.1 | .0008 | Insulin level | | 1 | 181780342 | 226780342 | Rat | n/a | region | qtl |
| 2302378 | Insul11 | Insulin level QTL 11 | 3.25 | | Insulin level | | 1 | 146971846 | 247322277 | Rat | n/a | region | qtl |
| 2303622 | Vencon6 | Ventilatory control QTL 6 | | .001 | Ventilatory control | re-oxygenation after hypoxia | 1 | 158856292 | 203856292 | Rat | n/a | region | qtl |
| 2300187 | Bmd41 | Bone mineral density QTL 41 | 8.9 | .0001 | Bone mineral density | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2300161 | Bmd43 | Bone mineral density QTL 43 | 8.4 | .0001 | Bone mineral density | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2300174 | Bmd42 | Bone mineral density QTL 42 | 8.4 | .0001 | Bone mineral density | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2293673 | Bss27 | Bone structure and strength QTL 27 | 18.63 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2293689 | Bss47 | Bone structure and strength QTL 47 | 7.25 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2293677 | Bss41 | Bone structure and strength QTL 41 | 9.38 | .0001 | Bone structure | | 1 | 176612333 | 221612333 | Rat | n/a | region | qtl |
| 2325725 | Eae31 | Experimental allergic encephalomyelitis QTL 31 | | | Brain/spinal cord inflammation | | 1 | 183163129 | 193070197 | Rat | n/a | region | qtl |
| 2313060 | Bss71 | Bone structure and strength QTL 71 | 2.6 | .0001 | Bone structure | | 1 | 119780411 | 186391852 | Rat | n/a | region | qtl |
| 631670 | Iddm10 | Insulin dependent diabetes mellitus QTL 10 | 1.9 | | Glucose level | | 1 | 178054386 | 201472944 | Rat | n/a | region | qtl |
| 1302787 | Stl25 | Serum triglyceride level QTL 25 | 2.7 | .0073 | Lipid level | triglyceride level | 1 | 184857716 | 216663271 | Rat | n/a | region | qtl |
| 6903303 | Scl34 | Serum cholesterol QTL 34 | 2.5 | .0033 | Lipid level | cholesterol level | 1 | 184857716 | 223729371 | Rat | n/a | region | qtl |
| 1549830 | Bss1 | Bone structure and strength QTL 1 | 4.8 | | Bone strength | Femoral ultimate force | 1 | 177666790 | 222666790 | Rat | n/a | region | qtl |
| 71118 | Thym1 | Thymus enlargement QTL 1 | 10.68 | .001 | Gland mass | thymus | 1 | 141471946 | 186471946 | Rat | n/a | region | qtl |
| 631519 | Pia11 | Pristane induced arthritis QTL 11 | 5.3 | | Joint/bone inflammation | arthritis severity | 1 | 83489176 | 186472032 | Rat | n/a | region | qtl |
| 61347 | Bp197 | Blood pressure QTL 197 | 4.2 | | Blood pressure | systolic blood pressure | 1 | 163190108 | 208190108 | Rat | n/a | region | qtl |
