| 1000 | 2298546 | Neuinf4 | Neuroinflammation QTL 4 | 3.5 | | Neuroinflammation | | 1 | 1 | 41225199 | Rat | n/a | region | qtl |
| 1000 | 1578669 | Bss9 | Bone structure and strength QTL 9 | 6.3 | | Bone structure | femoral neck trabecular area | 1 | 390736 | 37647484 | Rat | n/a | region | qtl |
| 1000 | 1578650 | Bmd6 | Bone mineral density QTL 6 | 12.2 | | Bone mineral density | femoral neck total vBMD | 1 | 390736 | 37647484 | Rat | n/a | region | qtl |
| 1000 | 1578651 | Bmd7 | Bone mineral density QTL 7 | 14.2 | | Bone mineral density | femoral neck cortical vBMD | 1 | 390736 | 37647484 | Rat | n/a | region | qtl |
| 1000 | 1554320 | Bmd1 | Bone mineral density QTL 1 | 12.2 | .0001 | Bone mineral density | midshaft femur volumetric BMD spine area by pQCT | 1 | 390736 | 74903688 | Rat | n/a | region | qtl |
| 1000 | 738020 | Pia8 | Pristane induced arthritis QTL 8 | 4.7 | | Joint/bone inflammation | arthritis severity | 1 | 1595127 | 64145956 | Rat | n/a | region | qtl |
| 1000 | 1600360 | Mcs16 | Mammary carcinoma susceptibility QTL 16 | 2.4 | | Mammary tumor susceptibility | | 1 | 2436832 | 37799020 | Rat | n/a | region | qtl |
| 1000 | 631688 | Hcas2 | Hepatocarcinoma susceptibility QTL 2 | 3 | .0001 | Liver tumor susceptibility | nodule number | 1 | 6253946 | 116153262 | Rat | n/a | region | qtl |
| 1000 | 1300167 | Hrtrt2 | Heart rate QTL 2 | 4.35 | | Heart rate | salt-loaded | 1 | 11859997 | 63434427 | Rat | n/a | region | qtl |
| 1000 | 2313062 | Bmd73 | Bone mineral density QTL 73 | 3.9 | .0001 | Bone mineral density | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 1000 | 2313065 | Bss67 | Bone structure and strength QTL 67 | 3.1 | .0001 | Bone structure | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 1000 | 2313069 | Bss68 | Bone structure and strength QTL 68 | 2.9 | .0001 | Bone structure | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 1000 | 2313075 | Bss66 | Bone structure and strength QTL 66 | 3.4 | .0001 | Bone structure | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 1000 | 2313077 | Bss69 | Bone structure and strength QTL 69 | 3.5 | .0001 | Bone strength | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 1000 | 2313092 | Bmd72 | Bone mineral density QTL 72 | 2.5 | .0001 | Bone mineral density | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 1000 | 2313097 | Bss70 | Bone structure and strength QTL 70 | 3.5 | .0001 | Bone strength | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 1000 | 724520 | Bp145 | Blood pressure QTL 145 | 2.1 | .0024 | Blood pressure | systolic | 1 | 15147212 | 60147212 | Rat | n/a | region | qtl |
| 1000 | 5684998 | Bss101 | Bone structure and strength QTL 101 | 3.6 | | Bone strength | ultimate force | 1 | 15999377 | 43840628 | Rat | n/a | region | qtl |
| 1000 | 5684999 | Bss102 | Bone structure and strength QTL 102 | 5.5 | .00000072 | Bone strength | stiffness | 1 | 15999377 | 43840628 | Rat | n/a | region | qtl |
| 1000 | 1357397 | Bw41 | Body weight QTL 41 | 4.19 | .0001 | Body weight | | 1 | 22842898 | 43840628 | Rat | n/a | region | qtl |
| 1000 | 1357401 | Bw43 | Body weight QTL 43 | 3.75 | | Body weight | | 1 | 22842898 | 43840628 | Rat | n/a | region | qtl |
| 1000 | 1357400 | Bw62 | Body weight QTL62 | 4.05 | | Body fat amount | adiposity index | 1 | 22842898 | 67842898 | Rat | n/a | region | qtl |
| 1000 | 631495 | Bp96 | Blood pressure QTL 96 | 4.52 | | Blood pressure | systolic | 1 | 22842898 | 102532417 | Rat | n/a | region | qtl |
| 1000 | 1358192 | Ept13 | Estrogen-induced pituitary tumorigenesis QTL 13 | 3.4 | | Gland mass | pituitary | 1 | 23633441 | 77148378 | Rat | n/a | region | qtl |
| 1000 | 1358359 | Sradr1 | Stress Responsive Adrenal Weight QTL 1 | 4.74 | | Hypothalamic-pituitary-adrenal axis | adrenal gland weight | 1 | 28716493 | 124749065 | Rat | n/a | region | qtl |
| 1000 | 1331785 | Rf27 | Renal function QTL 27 | 4.643 | | Renal function | urine sodium concentration | 1 | 29683182 | 78134446 | Rat | n/a | region | qtl |
| 1000 | 1354599 | Bw29 | Body weight QTL 29 | 3.46 | .001 | Body weight | post-adrenalectomy | 1 | 31371950 | 76371950 | Rat | n/a | region | qtl |
| 1000 | 1354643 | Foco2 | Food consumption QTL 2 | 7.17 | .0001 | Consumption level | food intake | 1 | 31371950 | 76371950 | Rat | n/a | region | qtl |
| 1000 | 1331732 | Srn4 | Serum renin concentration QTL 4 | 4.467 | | Renin concentration | serum | 1 | 33134446 | 78134446 | Rat | n/a | region | qtl |
| 1000 | 1331792 | Rf29 | Renal function QTL 29 | 4.589 | | Renal function | urine potassium concentration | 1 | 33134446 | 78134446 | Rat | n/a | region | qtl |
| 1000 | 61433 | Cia2 | Collagen induced arthritis QTL 2 | 5 | | Joint/bone inflammation | type II collagen induced | 1 | 33153323 | 78153323 | Rat | n/a | region | qtl |