| 1000 | 2300159 | Bmd61 | Bone mineral density QTL 61 | 5.3 | .0001 | Bone mineral density | | 14 | 1 | 27616586 | Rat | n/a | region | qtl |
| 1000 | 2300183 | Bmd60 | Bone mineral density QTL 60 | 5.7 | .0001 | Bone mineral density | | 14 | 1 | 27616586 | Rat | n/a | region | qtl |
| 1000 | 619619 | Rf4 | Renal disease susceptibility QTL 4 | 4.1 | .002 | Renal function | urine protein excretion rate to body weight ratio | 14 | 1 | 34067237 | Rat | n/a | region | qtl |
| 1000 | 634352 | Apr6 | Acute phase response QTL 6 | 3.7 | | IL-6 level | pristane induced | 14 | 1 | 42665455 | Rat | n/a | region | qtl |
| 1000 | 71115 | Niddm15 | Non-insulin dependent diabetes mellitus QTL 15 | 4.8 | | Glucose level | plasma glucose homeostasis | 14 | 1764386 | 12386683 | Rat | n/a | region | qtl |
| 1000 | 70204 | Niddm20 | Non-insulin dependent diabetes mellitus QTL 20 | 5.1 | .000008 | Glucose level | postprandial | 14 | 1764386 | 18915962 | Rat | n/a | region | qtl |
| 1000 | 724541 | Niddm53 | Non-insulin dependent diabetes mellitus QTL 53 | | .001 | Glucose level | | 14 | 4895894 | 10340377 | Rat | n/a | region | qtl |
| 1000 | 2293089 | Iddm31 | Insulin dependent diabetes mellitus QTL 31 | 4.08 | | Glucose level | insulin-dependent | 14 | 4895894 | 19800418 | Rat | n/a | region | qtl |
| 1000 | 1300114 | Srn2 | Serum renin concentration QTL 2 | 3.27 | | Renin concentration | salt-loaded | 14 | 4895894 | 22837299 | Rat | n/a | region | qtl |
| 1000 | 70195 | Mcs8 | Mammary carcinoma susceptibility QTL 8 | 4.28 | | Mammary tumor susceptibility | | 14 | 4895894 | 26416791 | Rat | n/a | region | qtl |
| 1000 | 1331740 | Bw26 | Body weight QTL 26 | 3.028 | | Body weight | | 14 | 4895894 | 33040140 | Rat | n/a | region | qtl |
| 1000 | 1581500 | Renag1 | Renal agenesis QTL 1 | | | Renal agenesis | agenesis incidence | 14 | 9428445 | 73480320 | Rat | n/a | region | qtl |
| 1000 | 731183 | Pia20 | Pristane induced arthritis QTL 20 | 3.55 | | Joint/bone inflammation | arthritis severity | 14 | 10340377 | 41608939 | Rat | n/a | region | qtl |
| 1000 | 1358296 | Ael3 | Aortic elastin QTL 3 | 3.7 | .00051 | Protein level | aortic elastin | 14 | 10539919 | 55539919 | Rat | n/a | region | qtl |
| 1000 | 2302045 | Pia39 | Pristane induced arthritis QTL 39 | 4.9 | .001 | Joint/bone inflammation | pristane induced | 14 | 10539919 | 55539919 | Rat | n/a | region | qtl |
| 1000 | 2302277 | Gluco38 | Glucose level QTL 38 | 5.8 | | Glucose level | | 14 | 12386493 | 30087990 | Rat | n/a | region | qtl |
| 1000 | 631839 | Niddm37 | Non-insulin dependent diabetes mellitus QTL 37 | 3.37 | | Glucose level | post-pancreatectomy | 14 | 12386493 | 102509397 | Rat | n/a | region | qtl |
| 1000 | 631212 | Bw5 | Body weight QTL5 | 5.43 | | Body fat amount | retroperitoneal | 14 | 12386683 | 32584630 | Rat | n/a | region | qtl |
| 1000 | 1300140 | Srn3 | Serum renin concentration QTL 3 | 3.19 | | Renin concentration | salt-loaded | 14 | 16432517 | 33157602 | Rat | n/a | region | qtl |
| 1000 | 631528 | Scl11 | Serum cholesterol level QTL 11 | 4.9 | | Lipid level | cholesterol | 14 | 19110728 | 38152541 | Rat | n/a | region | qtl |
| 1000 | 631262 | Tcas4 | Tongue tumor susceptibility QTL 4 | | | Tongue tumor susceptibility | | 14 | 19141961 | 45020354 | Rat | n/a | region | qtl |
| 1000 | 61413 | Eae10 | Experimental allergic encephalomyelitis QTL 10 | 3.5 | | Brain/spinal cord inflammation | relapsing disease | 14 | 19142085 | 19800225 | Rat | n/a | region | qtl |
| 1000 | 61420 | Pia6 | Pristane induced arthritis QTL 6 | 4.9 | | Joint/bone inflammation | number of affected paws | 14 | 20165393 | 45020354 | Rat | n/a | region | qtl |
| 1000 | 2313397 | Coatc1 | Coat color QTL1 | | | Coat color | white spotting | 14 | 21150250 | 66150250 | Rat | n/a | region | qtl |
| 1000 | 71117 | Niddm17 | Non-insulin dependent diabetes mellitus QTL 17 | 2.35 | | Glucose level | plasma glucose | 14 | 22520291 | 67520291 | Rat | n/a | region | qtl |
| 1000 | 70187 | Pancm5 | Pancreatic morphology QTL 5 | 16.7 | | Gland mass | pancreas | 14 | 32584630 | 86587723 | Rat | n/a | region | qtl |
| 1000 | 2324617 | Coatc2 | Coat color QTL 2 | | .001 | Coat color | hooded | 14 | 33039698 | 41707592 | Rat | n/a | region | qtl |
| 1000 | 1300154 | Bp189 | Blood pressure QTL 189 | 3.04 | | Blood pressure | salt-loaded diastolic | 14 | 33157432 | 73956701 | Rat | n/a | region | qtl |
| 1000 | 2313048 | Bss84 | Bone structure and strength QTL 84 | 3.1 | .0001 | Bone strength | | 14 | 40156028 | 85156028 | Rat | n/a | region | qtl |
| 1000 | 2313084 | Bss83 | Bone structure and strength QTL 83 | 2.9 | .0001 | Bone structure | | 14 | 40156028 | 85156028 | Rat | n/a | region | qtl |
| 1000 | 2313089 | Bss81 | Bone structure and strength QTL 81 | 3.4 | .0001 | Bone structure | | 14 | 40156028 | 85156028 | Rat | n/a | region | qtl |
| 1000 | 2313100 | Bss82 | Bone structure and strength QTL 82 | 3 | .0001 | Bone structure | | 14 | 40156028 | 85156028 | Rat | n/a | region | qtl |
| 1000 | 738037 | Hcas6 | Hepatocarcinoma susceptibility QTL 6 | 2.93 | | Liver tumor susceptibility | volume fraction | 14 | 41608939 | 89192873 | Rat | n/a | region | qtl |