| 1000 | 2303568 | Bw88 | Body weight QTL 88 | 3 | | Body weight | | 12 | 1 | 25457135 | Rat | n/a | region | qtl |
| 1000 | 6893681 | Bw109 | Body weight QTL 109 | 2.3 | .004 | Body weight | salt-loaded | 12 | 1 | 25938641 | Rat | n/a | region | qtl |
| 1000 | 61331 | Eau2 | Experimental allergic uveoretinitis QTL 2 | | .0005 | Uvea inflammation score | | 12 | 1 | 29130348 | Rat | n/a | region | qtl |
| 1000 | 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | | Blood pressure | systolic | 12 | 1 | 35270263 | Rat | n/a | region | qtl |
| 1000 | 2303575 | Insul14 | Insulin level QTL 14 | 4 | | Insulin level | | 12 | 1 | 43562201 | Rat | n/a | region | qtl |
| 1000 | 737979 | Pia22 | Pristane induced arthritis QTL 22 | 4.1 | | Joint/bone inflammation | arthritis severity | 12 | 530865 | 45530865 | Rat | n/a | region | qtl |
| 1000 | 631521 | Pia12 | Pristane induced arthritis QTL 12 | 8.9 | | Joint/bone inflammation | arthritis severity | 12 | 555108 | 24748499 | Rat | n/a | region | qtl |
| 1000 | 61416 | Pia4 | Pristane induced arthritis QTL 4 | 8.4 | | Joint/bone inflammation | number of affected paws | 12 | 568621 | 45568621 | Rat | n/a | region | qtl |
| 1000 | 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | IL-6 level | pristane induced | 12 | 568621 | 45568621 | Rat | n/a | region | qtl |
| 1000 | 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | .001 | Joint/bone inflammation | pristane induced | 12 | 568621 | 45568621 | Rat | n/a | region | qtl |
| 1000 | 2312418 | Kidm41 | Kidney mass QTL 41 | 3.7 | .0001 | Kidney mass | | 12 | 665384 | 20932760 | Rat | n/a | region | qtl |
| 1000 | 634350 | Apr4 | Acute phase response QTL 4 | 6 | | Alpha1 acid glycoprotein level | pristane induced | 12 | 2248421 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 61421 | Cia12 | Collagen induced arthritis QTL 12 | 4.6 | | Joint/bone inflammation | type II collagen induced | 12 | 7148164 | 36894750 | Rat | n/a | region | qtl |
| 1000 | 1600391 | Edcs2 | Endometrial carcinoma susceptibility QTL2 | 3.5 | .01 | Endometrial tumor susceptibility | | 12 | 7382953 | 27853771 | Rat | n/a | region | qtl |
| 1000 | 1302792 | Scl21 | Serum cholesterol QTL 21 | 3.8 | .0011 | Lipid level | cholesterol | 12 | 7754826 | 25802539 | Rat | n/a | region | qtl |
| 1000 | 2293086 | Iddm30 | Insulin dependent diabetes mellitus QTL 30 | 3.42 | | Glucose level | insulin-dependent | 12 | 8901318 | 29369703 | Rat | n/a | region | qtl |
| 1000 | 1331739 | Hrtrt14 | Heart rate QTL 14 | 3.56232 | | Heart rate | | 12 | 9628802 | 17773949 | Rat | n/a | region | qtl |
| 1000 | 1300157 | Rf21 | Renal function QTL 21 | 4.42 | | Renal function | salt-loaded renal blood flow | 12 | 9628802 | 33216334 | Rat | n/a | region | qtl |
| 1000 | 1549829 | Scl48 | Serum cholesterol level QTL 48 | 5 | | Lipid level | baseline serum cholesterol | 12 | 10716230 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 1331786 | Kidm11 | Kidney mass QTL 11 | 3.571 | | Kidney mass | right kidney mass | 12 | 11416955 | 25271941 | Rat | n/a | region | qtl |
| 1000 | 1331755 | Bp219 | Blood pressure QTL 219 | 3.041 | | Blood pressure | mean arterial | 12 | 11416955 | 29130304 | Rat | n/a | region | qtl |
| 1000 | 1331761 | Bp218 | Blood pressure QTL 218 | 2.973 | | Blood pressure | mean arterial | 12 | 11416955 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 2293699 | Bss49 | Bone structure and strength QTL 49 | 5.61 | .0001 | Bone structure | | 12 | 11612769 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 2300186 | Bmd59 | Bone mineral density QTL 59 | 7.1 | .0001 | Bone mineral density | | 12 | 11612769 | 46782294 | Rat | n/a | region | qtl |