| 1000 | 2290452 | Scl56 | Serum cholesterol level QTL 56 | 2.26 | | Lipid level | cholesterol level | 3 | 1 | 90573782 | Rat | n/a | region | qtl |
| 1000 | 1358905 | Hrtrt17 | Heart rate QTL 17 | 5.9 | .000014 | Heart rate | salt-loaded | 3 | 6662627 | 88648585 | Rat | n/a | region | qtl |
| 1000 | 1358885 | Bp251 | Blood pressure QTL 251 | 3.8 | | Blood pressure | mean arterial | 3 | 10267741 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 1358888 | Bp264 | Blood pressure QTL 264 | 4.43 | | Blood pressure | mean arterial | 3 | 10267741 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 2298542 | Neuinf11 | Neuroinflammation QTL 11 | .6 | | Neuroinflammation | | 3 | 10829503 | 75308165 | Rat | n/a | region | qtl |
| 1000 | 2302055 | Pia30 | Pristane induced arthritis QTL 30 | 3.5 | .001 | Joint/bone inflammation | pristane induced | 3 | 25222506 | 70222506 | Rat | n/a | region | qtl |
| 1000 | 1354590 | Despr11 | Despair related QTL 11 | | .000031 | Activity level | climbing level | 3 | 25754538 | 70754538 | Rat | n/a | region | qtl |
| 1000 | 2303593 | Gluco46 | Glucose level QTL 46 | 3 | | Glucose level | post-restraint | 3 | 25754538 | 70754538 | Rat | n/a | region | qtl |
| 1000 | 737818 | Hcar12 | Hepatocarcinoma resistance QTL 12 | 2.6 | | Liver tumor resistance | nodule number | 3 | 25775548 | 118863223 | Rat | n/a | region | qtl |
| 1000 | 61419 | Cia11 | Collagen induced arthritis QTL 11 | 5.6 | | Joint/bone inflammation | type II collagen induced | 3 | 26674018 | 97524000 | Rat | n/a | region | qtl |
| 1000 | 631647 | Bp122 | Blood pressure QTL 122 | 6.2 | | Blood pressure | salt-loaded systolic | 3 | 28022667 | 73022667 | Rat | n/a | region | qtl |
| 1000 | 61356 | Bp37 | Blood pressure QTL 37 | 3 | | Blood pressure | salt-loaded systolic | 3 | 28022667 | 73022667 | Rat | n/a | region | qtl |
| 1000 | 1354589 | Bw31 | Body weight QTL 31 | 3.3 | | Body weight | | 3 | 30253942 | 76620970 | Rat | n/a | region | qtl |
| 1000 | 1354604 | Bw36 | Body weight QTL 36 | 2.9 | | Body weight | | 3 | 30253942 | 103304908 | Rat | n/a | region | qtl |
| 1000 | 1358362 | Srcrt2 | Stress Responsive Cort QTL 2 | 2.78 | | Hypothalamic-pituitary-adrenal axis | corticosterone post-stress | 3 | 35237920 | 134686096 | Rat | n/a | region | qtl |
| 1000 | 738019 | Anxrr10 | Anxiety related response QTL 10 | 3.9 | | Anxiety response | open field inner locomotion | 3 | 36264666 | 81264666 | Rat | n/a | region | qtl |
| 1000 | 1331777 | Bw24 | Body weight QTL 24 | 3.503 | | Body weight | | 3 | 36556706 | 87981257 | Rat | n/a | region | qtl |
| 1000 | 1331795 | Rf30 | Renal function QTL 30 | 3.708 | | Renal function | urine potassium concentration | 3 | 36556706 | 87981257 | Rat | n/a | region | qtl |
| 1000 | 1354597 | Kidm13 | Kidney mass QTL 13 | 2.9 | | Kidney mass | right kidney mass | 3 | 39052756 | 103304908 | Rat | n/a | region | qtl |
| 1000 | 2301970 | Bw81 | Body weight QTL 81 | 5.19 | | Body weight | | 3 | 39052756 | 158038027 | Rat | n/a | region | qtl |
| 1000 | 2301971 | Cm71 | Cardiac mass QTL 71 | 4.63 | | Cardiac mass | left ventricle | 3 | 39052756 | 158038027 | Rat | n/a | region | qtl |
| 1000 | 1300178 | Hrtrt4 | Heart rate QTL 4 | 3.74 | | Heart rate | salt-loaded | 3 | 41054012 | 89859652 | Rat | n/a | region | qtl |
| 1000 | 1581503 | Cm58 | Cardiac mass QTL 58 | 2.7 | .05 | Cardiac mass | left ventricle | 3 | 41054012 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 1559282 | Emca5 | Estrogen-induced mammary cancer QTL 5 | 3.9 | | Mammary tumor susceptibility | estradiol-induced | 3 | 41054012 | 171063335 | Rat | n/a | region | qtl |
| 1000 | 2292591 | Esta4 | Estrogen-induced thymic atrophy QTL 4 | | | Gland mass | thymus | 3 | 44551252 | 149496698 | Rat | n/a | region | qtl |
| 1000 | 1358186 | Ept2 | Estrogen-induced pituitary tumorigenesis QTL 2 | 8.3 | | Gland mass | pituitary | 3 | 44551542 | 110215186 | Rat | n/a | region | qtl |
| 1000 | 2292613 | Ept16 | Estrogen-induced pituitary tumorigenesis QTL 16 | 8.3 | | Gland mass | pituitary | 3 | 44551542 | 110215186 | Rat | n/a | region | qtl |
| 1000 | 631665 | Bw8 | Body weight QTL 8 | 5.5 | | Body weight | | 3 | 47722628 | 119673738 | Rat | n/a | region | qtl |
| 1000 | 724523 | Tsu1 | Thymus enlargement suppressive QTL 1 | 3.84 | | Gland mass | thymus | 3 | 47722800 | 115996144 | Rat | n/a | region | qtl |
| 1000 | 1582238 | Bw68 | Body weight QTL 68 | 3.2 | .0064 | Body weight | | 3 | 50522618 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 1582239 | Epfw1 | Epididymal fat weight QTL 1 | 4.5 | .0006 | Epididymal fat weight | | 3 | 50522618 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 1582218 | Bw74 | Body weight QTL 74 | 3.9 | .0021 | Body weight | | 3 | 50522618 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 61377 | Edpm3 | Estrogen-dependent pituitary mass QTL 3 | 7.05 | .038 | Gland mass | pituitary | 3 | 50522717 | 88648420 | Rat | n/a | region | qtl |
| 1000 | 731180 | Bp152 | Blood pressure QTL 152 | | .03 | Blood pressure | | 3 | 51161661 | 90573782 | Rat | n/a | region | qtl |
| 1000 | 1581568 | Rf53 | Renal function QTL 53 | | | Renal function | urine protein level | 3 | 53876762 | 163443738 | Rat | n/a | region | qtl |
| 1000 | 1582252 | Sual1 | Serum uric acid level QTL 1 | 3.4 | .0123 | Serum uric acid level | | 3 | 56359980 | 101359980 | Rat | n/a | region | qtl |
| 1000 | 1300111 | Rf12 | Renal function QTL 12 | 3.78 | | Renal function | salt-loaded renal blood flow | 3 | 58764506 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 631200 | Cm25 | Cardiac mass QTL 25 | 4.8 | .0001 | Cardiac mass | left ventricle | 3 | 58882977 | 87981062 | Rat | n/a | region | qtl |
| 1000 | 1582210 | Bw71 | Body weight QTL 71 | 3.3 | .0012 | Body weight | | 3 | 62558027 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 1582221 | Kidm30 | Kidney mass QTL 30 | 3.5 | .0008 | Kidney mass | | 3 | 62558027 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 2301414 | Kidm37 | Kidney mass QTL 37 | | .001 | Kidney mass | | 3 | 68816911 | 121619110 | Rat | n/a | region | qtl |