| 1000 | 1578671 | Bmd10 | Bone mineral density QTL 10 | 5.4 | | Bone mineral density | femoral neck cortical vBMD | 2 | 9670332 | 227150249 | Rat | n/a | region | qtl |
| 1000 | 1358913 | Cm41 | Cardiac mass QTL 41 | 2.73 | | Cardiac mass | | 2 | 24474447 | 212169089 | Rat | n/a | region | qtl |
| 1000 | 1358917 | Cm42 | Cardiac mass QTL 42 | 2.82 | | Cardiac mass | | 2 | 24474447 | 212169089 | Rat | n/a | region | qtl |
| 1000 | 61467 | Bp14 | Blood pressure QTL 14 | 2.2 | | Blood pressure | | 2 | 42866342 | 210636008 | Rat | n/a | region | qtl |
| 1000 | 631266 | Bp132 | Blood pressure QTL 132 | | .0005 | Blood pressure | systolic | 2 | 46542246 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1331760 | Bp206 | Blood pressure QTL 206 | 3.62454 | | Blood pressure | time series calculation | 2 | 56214854 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1298080 | Bp163 | Blood pressure QTL 163 | | .02 | Blood pressure | systolic | 2 | 66680022 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1354648 | Bp239 | Blood pressure QTL 239 | | .001 | Blood pressure | systolic | 2 | 66680209 | 235799396 | Rat | n/a | region | qtl |
| 1000 | 1354605 | Rf48 | Renal function QTL 48 | 2.9 | | Creatinine level | serum | 2 | 75806326 | 214989298 | Rat | n/a | region | qtl |
| 1000 | 61374 | Edpm2 | Estrogen-dependent pituitary mass QTL 2 | 4.42 | .86 | Gland mass | pituitary | 2 | 77630629 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 724534 | Uae6 | Urinary albumin excretion QTL 6 | 10 | | Renal function | urine albumin level | 2 | 79796833 | 227150249 | Rat | n/a | region | qtl |
| 1000 | 1581569 | Uae32 | Urinary albumin excretion QTL 32 | | .0001 | Renal function | urine albumin level | 2 | 79796977 | 227150051 | Rat | n/a | region | qtl |
| 1000 | 1581576 | Pur7 | Proteinuria QTL 7 | | .0001 | Renal function | urine protein level | 2 | 79796977 | 227150051 | Rat | n/a | region | qtl |
| 1000 | 1354622 | Kidm16 | Kidney mass QTL 16 | 3 | | Kidney mass | left kidney mass | 2 | 82826122 | 231465091 | Rat | n/a | region | qtl |
| 1000 | 1354649 | Kidm17 | Kidney mass QTL 17 | 2.9 | | Kidney mass | left kidney mass adjujsted for tibia length | 2 | 82826122 | 236153712 | Rat | n/a | region | qtl |
| 1000 | 631507 | Bp105 | Blood pressure QTL 105 | | .001 | Blood pressure | | 2 | 116874922 | 221284686 | Rat | n/a | region | qtl |
| 1000 | 634308 | Sach6 | Saccharin preference QTL 6 | 4.9 | | Consumption level | saccharin preference | 2 | 116874922 | 221284686 | Rat | n/a | region | qtl |
| 1000 | 1578648 | Bss11 | Bone structure and strength QTL 11 | 4.7 | | Bone structure | femoral neck cortical area | 2 | 118264490 | 220244597 | Rat | n/a | region | qtl |
| 1000 | 1554319 | Bmd2 | Bone mineral density QTL 2 | 13.4 | .0001 | Bone mineral density | spine area by pQCT | 2 | 118264840 | 221131552 | Rat | n/a | region | qtl |
| 1000 | 1300165 | Rf9 | Renal function QTL 9 | 3.28 | | Renal function | hypertension related glomerular damage | 2 | 138700979 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 70175 | BpQTLCluster3 | Blood pressure QTL cluster 3 | 2.76 | | Blood pressure | | 2 | 140403692 | 210636008 | Rat | n/a | region | qtl |
| 1000 | 1359022 | Ppulsi1 | Prepulse inhibition QTL 1 | 3.63 | | Prepulse inhibition | | 2 | 141755026 | 222281918 | Rat | n/a | region | qtl |
| 1000 | 1331805 | Cm29 | Cardiac mass QTL 29 | 3.50746 | | Cardiac mass | | 2 | 146228221 | 232307864 | Rat | n/a | region | qtl |
| 1000 | 1331794 | Bp202 | Blood pressure QTL 202 | 3.66819 | | Blood pressure | systolic | 2 | 146228221 | 232307864 | Rat | n/a | region | qtl |
| 1000 | 71113 | Cari2 | Carrageenan-induced inflammation QTL 2 | 2.7 | .009 | Carrageenan-induced inflammation | | 2 | 146659370 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1581578 | Cm49 | Cardiac mass QTL 49 | 4.9 | .01 | Cardiac mass | left ventricle | 2 | 148790600 | 227150249 | Rat | n/a | region | qtl |
| 1000 | 1641925 | Alcrsp2 | Alcohol response QTL 2 | | | Alcohol response | loss of righting reflex | 2 | 155101972 | 230157845 | Rat | n/a | region | qtl |
| 1000 | 1641891 | Alcrsp17 | Alcohol response QTL 17 | | | Alcohol response | loss of righting reflex | 2 | 155101972 | 247295816 | Rat | n/a | region | qtl |
| 1000 | 631501 | Bp101 | Blood pressure QTL 101 | 2.4 | | Blood pressure | systolic | 2 | 155920808 | 210636008 | Rat | n/a | region | qtl |
| 1000 | 1354609 | Niddm62 | Non-insulin dependent diabetes mellitus QTL 62 | 4.72 | .000006 | Insulin level | post-pancreatectomy | 2 | 156142685 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 2301966 | Bp322 | Blood pressure QTL 322 | 3.58 | | Blood pressure | systolic | 2 | 156142685 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 724568 | Uae13 | Urinary albumin excretion QTL 13 | 4.4 | | Renal function | urine albumin level | 2 | 161170272 | 218568266 | Rat | n/a | region | qtl |
| 1000 | 1302793 | Bw16 | Body weight QTL 16 | 5 | .0001 | Body weight | | 2 | 163154358 | 210636008 | Rat | n/a | region | qtl |
| 1000 | 1358900 | Bw48 | Body weight QTL 48 | 4.88 | | Body weight | | 2 | 163154358 | 227150051 | Rat | n/a | region | qtl |
| 1000 | 1298074 | Bp164 | Blood pressure QTL 164 | | .003 | Blood pressure | salt-loaded systolic | 2 | 165636169 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1298076 | Bp166 | Blood pressure QTL 166 | | .0009 | Blood pressure | systolic | 2 | 165636169 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1298085 | Bp165 | Blood pressure QTL 165 | | .0006 | Blood pressure | salt-loaded systolic | 2 | 165636169 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 1358356 | Srcrt1 | Stress Responsive Cort QTL1 | 3.66 | | Hypothalamic-pituitary-adrenal axis | corticosterone post-stress | 2 | 167857161 | 231465091 | Rat | n/a | region | qtl |
| 1000 | 2306901 | Bp337 | Blood pressure QTL 337 | | .01 | Blood pressure | salt-loaded systolic | 2 | 170338294 | 236153712 | Rat | n/a | region | qtl |
| 1000 | 1331734 | Bp204 | Blood pressure QTL 204 | 3.61192 | | Blood pressure | mean arterial | 2 | 174730375 | 232307864 | Rat | n/a | region | qtl |
| 1000 | 61469 | Bp16 | Blood pressure QTL 16 | 5.64 | | Blood pressure | | 2 | 177484675 | 222484675 | Rat | n/a | region | qtl |
| 1000 | 70162 | Bp63 | Blood pressure QTL 63 | 5.64 | | Blood pressure | | 2 | 177484675 | 222484675 | Rat | n/a | region | qtl |
| 1000 | 2293084 | Iddm26 | Insulin dependent diabetes mellitus QTL 26 | 2.9 | | Glucose level | insulin-dependent | 2 | 181710214 | 222281918 | Rat | n/a | region | qtl |
| 1000 | 1359031 | Bp275 | Blood pressure QTL 275 | | | Blood pressure | systolic | 2 | 183664122 | 228664122 | Rat | n/a | region | qtl |
| 1000 | 2300189 | Bmd48 | Bone mineral density QTL 48 | 5.8 | .0001 | Bone mineral density | | 2 | 187512114 | 232512114 | Rat | n/a | region | qtl |
| 1000 | 61417 | Cia10 | Collagen induced arthritis QTL 10 | 3.4 | | Joint/bone inflammation | type II collagen induced | 2 | 188136088 | 233136088 | Rat | n/a | region | qtl |
| 1000 | 4889834 | Pur24 | Proteinuria QTL 24 | 5.8 | .014 | Renal function | urine protein level | 2 | 191378142 | 210636169 | Rat | n/a | region | qtl |
| 1000 | 738013 | Alc15 | Alcohol consumption QTL 15 | 4.1 | .00022 | Consumption level | alcohol amount | 2 | 192489056 | 237489056 | Rat | n/a | region | qtl |
| 1000 | 61458 | Bp10 | Blood pressure QTL 10 | 3.42 | | Blood pressure | salt-loaded | 2 | 196657749 | 224108082 | Rat | n/a | region | qtl |
| 1000 | 1298083 | Bp158 | Blood pressure QTL 158 | 2.62 | | Blood pressure | salt-loaded | 2 | 196657749 | 224108082 | Rat | n/a | region | qtl |
| 1000 | 1331745 | Bp203 | Blood pressure QTL 203 | 4.377 | | Blood pressure | mean arterial | 2 | 197256223 | 227310008 | Rat | n/a | region | qtl |
| 1000 | 1581499 | Esta2 | Estrogen-induced thymic atrophy QTL 2 | | | Gland mass | thymus | 2 | 197256223 | 235940600 | Rat | n/a | region | qtl |
| 1000 | 61366 | Iddm3 | Insulin dependent diabetes mellitus QTL 3 | 4.7 | | Glucose level | | 2 | 197256223 | 242256223 | Rat | n/a | region | qtl |
| 1000 | 61398 | Bp50 | Blood pressure QTL 50 | 4.4 | | Blood pressure | systolic | 2 | 197256223 | 242256223 | Rat | n/a | region | qtl |
| 1000 | 2301408 | Kidm36 | Kidney mass QTL 36 | | .002 | Kidney mass | | 2 | 198324984 | 235811584 | Rat | n/a | region | qtl |
| 1000 | 2317752 | Glom23 | Glomerulus QTL 23 | 3.6 | | Renal pathology | urine protein level | 2 | 201223893 | 254933362 | Rat | n/a | region | qtl |
| 1000 | 1598813 | Memor9 | Memory QTL 9 | 2.7 | | Memory | navigation-spatial | 2 | 207443643 | 243502158 | Rat | n/a | region | qtl |
| 1000 | 1598835 | Anxrr18 | Anxiety related response QTL 18 | 2.98 | | Anxiety response | defensive burying- rearing | 2 | 210033012 | 255033012 | Rat | n/a | region | qtl |
| 1000 | 2298479 | Eau5 | Experimental allergic uveoretinitis QTL 5 | | .0021 | Uvea inflammation | | 2 | 210636008 | 247306073 | Rat | n/a | region | qtl |
| 1000 | 1302789 | Stl26 | Serum triglyceride level QTL 26 | 3.1 | .0035 | Lipid level | triglyceride level | 2 | 212168913 | 242131387 | Rat | n/a | region | qtl |
| 1000 | 2299161 | Iddm33 | Insulin dependent diabetes mellitus QTL 33 | 2.98 | | Glucose level | insulin-dependent | 2 | 214633709 | 247295816 | Rat | n/a | region | qtl |
| 1000 | 631203 | Gluco14 | Glucose level QTL 14 | | .0001 | Glucose level | postprandial | 2 | 214988814 | 227924156 | Rat | n/a | region | qtl |
| 1000 | 2307174 | Activ3 | Activity QTL 3 | 4.83 | .000058 | Activity level | Locomotor activity | 2 | 216711618 | 222281918 | Rat | n/a | region | qtl |
| 1000 | 631563 | Hcuc3 | Hepatic copper content QTL 3 | 3.87 | | Copper level | hepatic | 2 | 217985582 | 238139978 | Rat | n/a | region | qtl |
| 1000 | 1549836 | Bss2 | Bone structure and strength QTL 2 | 7.5 | | Bone structure and strength | Femoral midshaft moment of inertia | 2 | 221002002 | 258207540 | Rat | n/a | region | qtl |
| 1000 | 1298075 | Scl17 | Serum cholesterol level QTL 17 | 3.4 | | Lipid level | cholesterol | 2 | 221002002 | 258207540 | Rat | n/a | region | qtl |
| 1000 | 7207482 | Bss107 | Bone structure and strength QTL 107 | 7 | | Bone strength | Femoral ultimate force | 2 | 221002002 | 258207540 | Rat | n/a | region | qtl |
| 1000 | 7207484 | Bss108 | Bone structure and strength QTL 108 | 5.3 | | Bone strength | Femoral energy to break | 2 | 221002002 | 258207540 | Rat | n/a | region | qtl |
| 1000 | 7207490 | Bss111 | Bone structure and strength QTL 111 | 6.4 | | Bone structure | Femoral midshaft cortical area | 2 | 221002002 | 258207540 | Rat | n/a | region | qtl |
| 1000 | 2317885 | Alcrsp28 | Alcohol response QTL 28 | 2.1 | .63 | Alcohol response | blood ethanol concentration | 2 | 222136025 | 258207540 | Rat | n/a | region | qtl |
| 1000 | 1300126 | Bp175 | Blood pressure QTL 175 | 3.46 | | Blood pressure | salt-loaded time series calculation | 2 | 222939299 | 256217383 | Rat | n/a | region | qtl |
| 1000 | 2313073 | Bmd75 | Bone mineral density QTL 75 | 4.1 | .0001 | Bone mineral density | | 2 | 224179988 | 247306073 | Rat | n/a | region | qtl |
| 1000 | 631514 | Scl8 | Serum cholesterol level QTL8 | 4.4 | | Lipid level | cholesterol | 2 | 224795742 | 258207540 | Rat | n/a | region | qtl |
| 1000 | 1331767 | Hrtrt12 | Heart rate QTL 12 | 3.373 | | Heart rate | | 2 | 227309864 | 250463890 | Rat | n/a | region | qtl |
| 1000 | 1359019 | Hrtrt19 | Heart rate QTL 19 | 2.9 | | Heart rate | stress-induced early trial bradycardia | 2 | 228663949 | 234266109 | Rat | n/a | region | qtl |
| 1000 | 2293833 | Kiddil8 | Kidney dilation QTL 8 | 2.9 | | Renal pathology | kidney dilation | 2 | 228663949 | 256217383 | Rat | n/a | region | qtl |
| 1000 | 2293844 | Kiddil7 | Kidney dilation QTL 7 | 3.5 | | Renal pathology | kidney dilation | 2 | 228663949 | 256217383 | Rat | n/a | region | qtl |