| 1000 | 1358885 | Bp251 | Blood pressure QTL 251 | 3.8 | | Blood pressure | mean arterial | 3 | 10267741 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 1358888 | Bp264 | Blood pressure QTL 264 | 4.43 | | Blood pressure | mean arterial | 3 | 10267741 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 737818 | Hcar12 | Hepatocarcinoma resistance QTL 12 | 2.6 | | Liver tumor resistance | nodule number | 3 | 25775548 | 118863223 | Rat | n/a | region | qtl |
| 1000 | 1358362 | Srcrt2 | Stress Responsive Cort QTL 2 | 2.78 | | Hypothalamic-pituitary-adrenal axis | corticosterone post-stress | 3 | 35237920 | 134686096 | Rat | n/a | region | qtl |
| 1000 | 2301970 | Bw81 | Body weight QTL 81 | 5.19 | | Body weight | | 3 | 39052756 | 158038027 | Rat | n/a | region | qtl |
| 1000 | 2301971 | Cm71 | Cardiac mass QTL 71 | 4.63 | | Cardiac mass | left ventricle | 3 | 39052756 | 158038027 | Rat | n/a | region | qtl |
| 1000 | 1581503 | Cm58 | Cardiac mass QTL 58 | 2.7 | .05 | Cardiac mass | left ventricle | 3 | 41054012 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 1559282 | Emca5 | Estrogen-induced mammary cancer QTL 5 | 3.9 | | Mammary tumor susceptibility | estradiol-induced | 3 | 41054012 | 171063335 | Rat | n/a | region | qtl |
| 1000 | 2292591 | Esta4 | Estrogen-induced thymic atrophy QTL 4 | | | Gland mass | thymus | 3 | 44551252 | 149496698 | Rat | n/a | region | qtl |
| 1000 | 1358186 | Ept2 | Estrogen-induced pituitary tumorigenesis QTL 2 | 8.3 | | Gland mass | pituitary | 3 | 44551542 | 110215186 | Rat | n/a | region | qtl |
| 1000 | 2292613 | Ept16 | Estrogen-induced pituitary tumorigenesis QTL 16 | 8.3 | | Gland mass | pituitary | 3 | 44551542 | 110215186 | Rat | n/a | region | qtl |
| 1000 | 631665 | Bw8 | Body weight QTL 8 | 5.5 | | Body weight | | 3 | 47722628 | 119673738 | Rat | n/a | region | qtl |
| 1000 | 724523 | Tsu1 | Thymus enlargement suppressive QTL 1 | 3.84 | | Gland mass | thymus | 3 | 47722800 | 115996144 | Rat | n/a | region | qtl |
| 1000 | 1582238 | Bw68 | Body weight QTL 68 | 3.2 | .0064 | Body weight | | 3 | 50522618 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 1582239 | Epfw1 | Epididymal fat weight QTL 1 | 4.5 | .0006 | Epididymal fat weight | | 3 | 50522618 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 1582218 | Bw74 | Body weight QTL 74 | 3.9 | .0021 | Body weight | | 3 | 50522618 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 1581568 | Rf53 | Renal function QTL 53 | | | Renal function | urine protein level | 3 | 53876762 | 163443738 | Rat | n/a | region | qtl |
| 1000 | 1300111 | Rf12 | Renal function QTL 12 | 3.78 | | Renal function | salt-loaded renal blood flow | 3 | 58764506 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 1582210 | Bw71 | Body weight QTL 71 | 3.3 | .0012 | Body weight | | 3 | 62558027 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 1582221 | Kidm30 | Kidney mass QTL 30 | 3.5 | .0008 | Kidney mass | | 3 | 62558027 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 2301414 | Kidm37 | Kidney mass QTL 37 | | .001 | Kidney mass | | 3 | 68816911 | 121619110 | Rat | n/a | region | qtl |
| 1000 | 1600376 | Arunc5 | Aerobic running capacity QTL 5 | | .21 | Aerobic running capacity | best distance run to exhaustion | 3 | 73863223 | 118863223 | Rat | n/a | region | qtl |
| 1000 | 1581546 | Pur13 | Proteinuria QTL 13 | 2.93 | .0335 | Renal function | urine protein level | 3 | 76620970 | 148642985 | Rat | n/a | region | qtl |
| 1000 | 2302273 | Gluco35 | Glucose level QTL 35 | 5.3 | .001 | Glucose level | | 3 | 79283621 | 114574752 | Rat | n/a | region | qtl |
| 1000 | 1582219 | Bw63 | Body weight QTL 63 | 3.8 | .001 | Body weight | | 3 | 86696150 | 116023640 | Rat | n/a | region | qtl |
| 1000 | 631649 | Bp123 | Blood pressure QTL 123 | 3.2 | | Blood pressure | salt-loaded systolic | 3 | 89819539 | 134819539 | Rat | n/a | region | qtl |
| 1000 | 631841 | Niddm39 | Non-insulin dependent diabetes mellitus QTL 39 | 3.36 | | Glucose level | post-pancreatectomy | 3 | 93894678 | 161985069 | Rat | n/a | region | qtl |
| 1000 | 724532 | Cm17 | Cardiac mass QTL 17 | 2 | | Cardiac mass | | 3 | 96192217 | 141192217 | Rat | n/a | region | qtl |
| 1000 | 2293087 | Iddm27 | Insulin dependent diabetes mellitus QTL 27 | 2.37 | | Glucose level | insulin-dependent | 3 | 96506745 | 149496698 | Rat | n/a | region | qtl |
| 1000 | 2312659 | Slep7 | Serum leptin concentration QTL 7 | | .001 | Hormone level | leptin | 3 | 97523869 | 170016653 | Rat | n/a | region | qtl |
| 1000 | 2312670 | Bw94 | Body weight QTL 94 | | .01 | Body weight | adiposity index | 3 | 97523869 | 170016653 | Rat | n/a | region | qtl |
| 1000 | 2312673 | Scl63 | Serum cholesterol level QTL 63 | | .001 | Lipid level | serum cholesterol | 3 | 97523869 | 170016653 | Rat | n/a | region | qtl |
| 1000 | 2302373 | Gluco39 | Glucose level QTL 39 | 5.01 | | Glucose level | | 3 | 97524000 | 163778606 | Rat | n/a | region | qtl |
| 1000 | 1354611 | Despr2 | Despair related QTL 2 | | .0028 | Activity level | immobility level | 3 | 97595472 | 142595472 | Rat | n/a | region | qtl |
| 1000 | 1300161 | Rf10 | Renal function QTL 10 | 3.57 | | Renal function | hypertension related renal vascular resistance | 3 | 101298208 | 163335184 | Rat | n/a | region | qtl |
| 1000 | 1582216 | Bw65 | Body weight QTL 65 | 6.3 | | Body weight | | 3 | 101359810 | 116023640 | Rat | n/a | region | qtl |