| 1000 | 4142202 | Feml4_m | femur length in high growth mice 4 (mouse) | | | Not determined | | 11 | 59866991 | 93867100 | Mouse | n/a | region | qtl |
| 1000 | 1301182 | Vmbic6_m | ventral midbrain iron content 6 (mouse) | | | Not determined | | 11 | 59777286 | 93777433 | Mouse | n/a | region | qtl |
| 1000 | 1301548 | Idd4_m | insulin dependent diabetes susceptibility 4 (mouse) | | | Not determined | | 11 | 57677336 | 91677434 | Mouse | n/a | region | qtl |
| 1000 | 4142121 | Tmc1m2_m | Tmc1 modifier 2 (mouse) | | | Not determined | | 11 | 56786703 | 114128445 | Mouse | n/a | region | qtl |
| 1000 | 4141830 | Pregq1_m | pregnancy QTL 1 (mouse) | | | Not determined | | 11 | 54049428 | 83656328 | Mouse | n/a | region | qtl |
| 1000 | 4142148 | Ckdbp2_m | chronic kidney disease blood pressure locus 2 (mouse) | | | Not determined | | 11 | 54003617 | 65026517 | Mouse | n/a | region | qtl |
| 1000 | 4141612 | Cia40_m | collagen induced arthritis 40 (mouse) | | | Not determined | | 11 | 53988346 | 117993212 | Mouse | n/a | region | qtl |
| 1000 | 1302186 | Blmpf2_m | bleomycin-induced pulmonary fibrosis 2 (mouse) | | | Not determined | | 11 | 53988346 | 67001087 | Mouse | n/a | region | qtl |
| 1000 | 1558896 | Motp1_m | modifier of Trp53 1 (mouse) | | | Not determined | | 11 | 53313264 | 87313413 | Mouse | n/a | region | qtl |
| 1000 | 1300774 | Pgia7_m | proteoglycan induced arthritis 7 (mouse) | | | Not determined | | 11 | 53313264 | 87313413 | Mouse | n/a | region | qtl |
| 1000 | 1301238 | Pas5_m | pulmonary adenoma susceptibility 5 (mouse) | | | Not determined | | 11 | 52761978 | 86762125 | Mouse | n/a | region | qtl |
| 1000 | 1302108 | Skl5_m | skeletal size (tail length) 5 (mouse) | | | Not determined | | 11 | 52761978 | 86762125 | Mouse | n/a | region | qtl |
| 1000 | 1301906 | Bgeq9_m | body growth early QTL 9 (mouse) | | | Not determined | | 11 | 52761978 | 86762125 | Mouse | n/a | region | qtl |
| 1000 | 1300744 | Tshp10_m | tooth shape 10 (mouse) | | | Not determined | | 11 | 52761978 | 86762125 | Mouse | n/a | region | qtl |
| 1000 | 4141085 | Rbcq3_m | red blood cell QTL 3 (mouse) | | | Not determined | | 11 | 52607486 | 86607663 | Mouse | n/a | region | qtl |
| 1000 | 1301842 | Gvhd4_m | graft-versus host disease 4 (mouse) | | | Not determined | | 11 | 52101109 | 86101222 | Mouse | n/a | region | qtl |
| 1000 | 1357794 | Cinda1_m | cytokine induced activation 1 (mouse) | | | Not determined | | 11 | 51422759 | 85423006 | Mouse | n/a | region | qtl |
| 1000 | 1357827 | Hdl39_m | HDL level 39 (mouse) | | | Not determined | | 11 | 51422759 | 85423006 | Mouse | n/a | region | qtl |
| 1000 | 4141825 | Hdlq37_m | HDL QTL 37 (mouse) | | | Not determined | | 11 | 51422759 | 85423006 | Mouse | n/a | region | qtl |
| 1000 | 1301830 | Ssta4_m | susceptibility to Salmonella typhimurium antigens 4 (mouse) | | | Not determined | | 11 | 50000867 | 84001087 | Mouse | n/a | region | qtl |
| 1000 | 1558963 | Sphsr2_m | spermatocyte heat stress resistance 2 (mouse) | | | Not determined | | 11 | 50000867 | 84001087 | Mouse | n/a | region | qtl |
| 1000 | 4141832 | Vmmt12_m | vertebral morphology and mechanical traits 12 (mouse) | | | Not determined | | 11 | 46323910 | 80324021 | Mouse | n/a | region | qtl |
| 1000 | 1301999 | Lmr15_m | leishmaniasis resistance 15 (mouse) | | | Not determined | | 11 | 46242083 | 80242198 | Mouse | n/a | region | qtl |
| 1000 | 1357782 | Char8_m | P. chabaudi malaria resistance QTL 8 (mouse) | | | Not determined | | 11 | 46242083 | 80242198 | Mouse | n/a | region | qtl |
| 1000 | 4142024 | Azdm1_m | Alzheimer's disease modifier 1 (mouse) | | | Not determined | | 11 | 46242083 | 80242198 | Mouse | n/a | region | qtl |
| 1000 | 1301988 | Bmd11_m | bone mineral density 11 (mouse) | | | Not determined | | 11 | 46242083 | 80242198 | Mouse | n/a | region | qtl |
| 1000 | 4141641 | Fina1_m | fat induced adiposity 1 (mouse) | | | Not determined | | 11 | 46242083 | 80242198 | Mouse | n/a | region | qtl |
| 1000 | 1301987 | Pid3_m | prior incubation determinant 3 (mouse) | | | Not determined | | 11 | 44609496 | 78609590 | Mouse | n/a | region | qtl |
| 1000 | 1558967 | Scc15_m | colon tumor susceptibility 15 (mouse) | | | Not determined | | 11 | 43325202 | 77325392 | Mouse | n/a | region | qtl |
| 1000 | 4142300 | Ctrq3_m | C. trachomatis resistance QTL 3 (mouse) | | | Not determined | | 11 | 40728239 | 74728330 | Mouse | n/a | region | qtl |
| 1000 | 1302021 | Nidd1n_m | non-insulin-dependent diabetes mellitus 1 in NSY (mouse) | | | Not determined | | 11 | 39498226 | 73498375 | Mouse | n/a | region | qtl |
| 1000 | 1357868 | Manln11_m | mandible length 11 (mouse) | | | Not determined | | 11 | 38855553 | 72855725 | Mouse | n/a | region | qtl |
| 1000 | 1559011 | Pbmd4_m | peak bone mineral density 4 (mouse) | | | Not determined | | 11 | 38602850 | 72602967 | Mouse | n/a | region | qtl |
| 1000 | 4141853 | Skmw17_m | skeletal muscle weight 17 (mouse) | | | Not determined | | 11 | 37003617 | 71003740 | Mouse | n/a | region | qtl |
| 1000 | 4142384 | Hfem3_m | Hfe modifier 3 (mouse) | | | Not determined | | 11 | 37003617 | 71003740 | Mouse | n/a | region | qtl |
| 1000 | 4141183 | Elda1_m | ethanol induced low dose activation 1 (mouse) | | | Not determined | | 11 | 36988346 | 70988470 | Mouse | n/a | region | qtl |
| 1000 | 1300569 | Eae6b_m | susceptibility to experimental allergic encephalomyelitis 6b (mouse) | | | Not determined | | 11 | 36988346 | 70988470 | Mouse | n/a | region | qtl |
| 1000 | 1301896 | Tria1_m | T-cell receptor induced activation 1 (mouse) | | | Not determined | | 11 | 36536240 | 70536530 | Mouse | n/a | region | qtl |
| 1000 | 1301426 | Desp2_m | despair 2 (mouse) | | | Not determined | | 11 | 28631256 | 62631375 | Mouse | n/a | region | qtl |
| 1000 | 1357844 | Si5lq5_m | serum IGFBP-5 level QTL 5 (mouse) | | | Not determined | | 11 | 28088548 | 62088651 | Mouse | n/a | region | qtl |
| 1000 | 4142308 | W6q3_m | weight 6 weeks QTL 3 (mouse) | | | Not determined | | 11 | 12218640 | 68423006 | Mouse | n/a | region | qtl |