| 1000 | 1358890 | Bp259 | Blood pressure QTL 259 | 3.06 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 210702053 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 71112 | Bw115 | Body weight QTL 115 | 6 | 0.0001 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 259647732 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 631843 | Bw116 | Body weight QTL 116 | 4.1 | 0.016 | abdominal adipose amount (VT:1000220) | abdominal fat pad weight (CMO:0000088) | 1 | 224054293 | 260122809 | Rat | n/a | region | qtl |
| 1000 | 737975 | Bw122 | Body weight QTL 122 | 9.11 | 0.005 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 258843780 | 260122809 | Rat | n/a | region | qtl |
| 1000 | 1600392 | Bw123 | Body weight QTL 123 | | 0.001 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 223201027 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 1549910 | Bw54 | Body weight QTL 54 | | 0.05 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 214647894 | 259647894 | Rat | n/a | region | qtl |
| 1000 | 61327 | Eae7 | Experimental allergic encephalomyelitis QTL 7 | 5.6 | | body mass (VT:0001259) | change in body weight (CMO:0002045) | 1 | 216255568 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 724552 | Glom2 | Glomerulus QTL 2 | 3.3 | 0.0001 | kidney glomerulus morphology trait (VT:0005325) | count of superficial glomeruli directly contacting the kidney surface (CMO:0001001) | 1 | 222363780 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 1549837 | Hcar15 | Hepatocarcinoma resistance QTL 15 | | 0.05 | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 153136852 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 1578763 | Kidm29 | Kidney mass QTL 29 | 3.3 | 0.0001 | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 1 | 179567751 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 631536 | Lnnr2 | Liver neoplastic nodule remodeling QTL 2 | 2.9 | 0.0005 | liver integrity trait (VT:0010547) | liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705) | 1 | 233948574 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 70211 | Niddm24 | Non-insulin dependent diabetes mellitus QTL 24 | 3.79 | | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 214647894 | 259647894 | Rat | n/a | region | qtl |
| 1000 | 631837 | Niddm35 | Non-insulin dependent diabetes mellitus QTL 35 | | 0.01 | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 1 | 238699859 | 259647894 | Rat | n/a | region | qtl |
| 1000 | 634313 | Niddm43 | Non-insulin dependent diabetes mellitus QTL 43 | | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 199050459 | 259647894 | Rat | n/a | region | qtl |
| 1000 | 734767 | Niddm57 | Non-insulin dependent diabetes mellitus QTL 57 | | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 224054293 | 260122809 | Rat | n/a | region | qtl |
| 1000 | 734769 | Niddm58 | Non-insulin dependent diabetes mellitus QTL 58 | | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 224569538 | 260122809 | Rat | n/a | region | qtl |
| 1000 | 734768 | Niddm59 | Non-insulin dependent diabetes mellitus QTL 59 | | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 213843987 | 258843987 | Rat | n/a | region | qtl |
| 1000 | 2302040 | Pia35 | Pristane induced arthritis QTL 35 | 3.8 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 1 | 216255568 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 1581544 | Rf52 | Renal function QTL 52 | | 0.05 | urine total protein amount (VT:0000032) | urine protein excretion rate to body weight ratio (CMO:0001099) | 1 | 232156370 | 259647894 | Rat | n/a | region | qtl |
| 1000 | 1300108 | Rf8 | Renal function QTL 8 | 3.75 | | renal blood flow trait (VT:2000006) | absolute change in renal vascular resistance (CMO:0001900) | 1 | 228581588 | 259647894 | Rat | n/a | region | qtl |
| 1000 | 631690 | Scl5 | Serum cholesterol level QTL 5 | 2.1 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 1 | 236125214 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 10053715 | Scort24 | Serum corticosterone level QTL 24 | 2.13 | 0.0088 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 1 | 221414816 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 631836 | Stl31 | Serum triglyceride level QTL 31 | 4.64 | 0.00000487 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 1 | 237147813 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 631215 | Stl8 | Serum triglyceride level QTL 8 | 9.27 | 0.0001 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 1 | 225126575 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 731175 | Uae20 | Urinary albumin excretion QTL 20 | 3.5 | 0.0018 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 221264111 | 259647894 | Rat | n/a | region | qtl |