| 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | Joint/bone inflammation | type II collagen induced | 10 | 6380753 | 100633982 | Rat | n/a | region | qtl |
| 631554 | Bp133 | Blood pressure QTL 133 | | .005 | Blood pressure | systolic | 10 | 666709 | 65072453 | Rat | n/a | region | qtl |
| 631660 | Hcar1 | Hepatocarcinoma resistance QTL 1 | 3.4 | .0001 | Liver tumor resistance | nodule volume | 10 | 6172805 | 36254741 | Rat | n/a | region | qtl |
| 634327 | Hc4 | Hypercalciuria QTL 4 | 2.4 | | Renal function | calcium excretion | 10 | 1 | 38576664 | Rat | n/a | region | qtl |
| 737820 | Alc9 | Alcohol consumption QTL 9 | 2.2 | | Consumption level | alcohol preference | 10 | 5090008 | 19648894 | Rat | n/a | region | qtl |
| 631828 | Alc5 | Alcohol consumption QTL 5 | 2.4 | | Consumption level | alcohol preference | 10 | 5090008 | 17515458 | Rat | n/a | region | qtl |
| 1354587 | Kidm21 | Kidney mass QTL 21 | 3.3 | | Kidney mass | left kidney mass adjusted for body weight | 10 | 15274216 | 62791536 | Rat | n/a | region | qtl |
| 1576304 | Schws7 | Schwannoma susceptibility QTL 7 | | .0115 | Neural tumor susceptibility | tumor incidence | 10 | 1 | 41641939 | Rat | n/a | region | qtl |
| 1578761 | Stresp21 | Stress response QTL 21 | 3.3 | | Stress response | thymus weight | 10 | 7041744 | 52041744 | Rat | n/a | region | qtl |
| 1581497 | Esta1 | Estrogen-induced thymic atrophy QTL 1 | | | Gland mass | thymus | 10 | 4831560 | 67678060 | Rat | n/a | region | qtl |
| 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | .003 | Mammary tumor resistance | | 10 | 9762188 | 108776963 | Rat | n/a | region | qtl |
| 2298544 | Neuinf9 | Neuroinflammation QTL 9 | 4.6 | | Neuroinflammation | | 10 | 5761138 | 65668639 | Rat | n/a | region | qtl |
| 2293680 | Bss40 | Bone structure and strength QTL 40 | 5.66 | .0001 | Bone strength | | 10 | 1 | 35460104 | Rat | n/a | region | qtl |
| 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | Cardiac mass | left ventricle | 10 | 14721135 | 92841289 | Rat | n/a | region | qtl |
| 2313081 | Bss64 | Bone structure and strength QTL 64 | 1.3 | .0001 | Bone strength | | 10 | 5339759 | 21607865 | Rat | n/a | region | qtl |
| 2313104 | Bss61 | Bone structure and strength QTL 61 | .9 | .0001 | Bone structure | | 10 | 5339759 | 21607865 | Rat | n/a | region | qtl |
| 2313066 | Bss63 | Bone structure and strength QTL 63 | 1.4 | .0001 | Bone strength | | 10 | 5339759 | 21607865 | Rat | n/a | region | qtl |
| 2313095 | Bss62 | Bone structure and strength QTL 62 | 1.5 | .0001 | Bone structure | | 10 | 5339759 | 21607865 | Rat | n/a | region | qtl |
| 2313064 | Bmd71 | Bone mineral density QTL 71 | .9 | .0001 | Bone mineral density | | 10 | 5339759 | 21607865 | Rat | n/a | region | qtl |
| 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | Glucose level | postprandial | 10 | 14721135 | 154166503 | Rat | n/a | region | qtl |
| 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | Joint/bone inflammation | arthritis severity | 10 | 14721135 | 159833317 | Rat | n/a | region | qtl |