| 1000 | 2317029 | Aia19 | Adjuvant induced arthritis QTL 19 | 2.98 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 66978955 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 2317042 | Aia20 | Adjuvant induced arthritis QTL 20 | 3.38 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 37565079 | 82565079 | Rat | n/a | region | qtl |
| 1000 | 61325 | Aia5 | Adjuvant induced arthritis QTL 5 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 2317039 | Aia6 | Adjuvant induced arthritis QTL 6 | 4.31 | | joint integrity trait (VT:0010548) | right rear ankle joint diameter (CMO:0002150) | 10 | 66978955 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 2317043 | Aia7 | Adjuvant induced arthritis QTL 7 | 3.82 | | joint integrity trait (VT:0010548) | left rear ankle joint diameter (CMO:0002149) | 10 | 37565079 | 82565079 | Rat | n/a | region | qtl |
| 1000 | 12880050 | Am10 | Aortic mass QTL 10 | | 0.016 | aorta mass (VT:0002845) | aorta weight to aorta length to body weight ratio (CMO:0002722) | 10 | 74372084 | 84007272 | Rat | n/a | region | qtl |
| 1000 | 2306970 | Anxrr22 | Anxiety related response QTL 22 | 5.95 | | fear/anxiety-related behavior trait (VT:1000241) | number of periods of voluntary immobility (CMO:0001045) | 10 | 61345276 | 98211570 | Rat | n/a | region | qtl |
| 1000 | 8655655 | Arrd2 | Age-related retinal degeneration QTL 2 | 7.79 | | retinal layer morphology trait (VT:0003727) | percentage of study population developing retinopathy during a period of time (CMO:0002453) | 1 | 183970203 | 243914901 | Rat | n/a | region | qtl |
| 1000 | 8655855 | Arrd3 | Age-related retinal degeneration QTL 3 | 3.07 | | lens clarity trait (VT:0001304) | cataract incidence/prevalence measurement (CMO:0001585) | 1 | 183970203 | 243914901 | Rat | n/a | region | qtl |
| 1000 | 2293652 | Bmd22 | Bone mineral density QTL 22 | 4.9 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 2293705 | Bmd25 | Bone mineral density QTL 25 | 7.1 | 0.0001 | femur mineral mass (VT:0010011) | compact volumetric bone mineral density (CMO:0001730) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 2293679 | Bmd30 | Bone mineral density QTL 30 | 3.5 | 0.0001 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 2293669 | Bmd33 | Bone mineral density QTL 33 | 4.5 | 0.0001 | femur strength trait (VT:0010010) | femoral neck polar moment of inertia (CMO:0001670) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 1554317 | Bmd4 | Bone mineral density QTL 4 | 9.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 10 | 19816042 | 99406971 | Rat | n/a | region | qtl |
| 1000 | 2300175 | Bmd40 | Bone mineral density QTL 40 | 15.4 | 0.0001 | femur mineral mass (VT:0010011) | bone mineral density (CMO:0001226) | 1 | 201554356 | 246554356 | Rat | n/a | region | qtl |
| 1000 | 2300187 | Bmd41 | Bone mineral density QTL 41 | 8.9 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 2300174 | Bmd42 | Bone mineral density QTL 42 | 8.4 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | bone mineral density (CMO:0001226) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 2300161 | Bmd43 | Bone mineral density QTL 43 | 8.4 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 2300172 | Bmd57 | Bone mineral density QTL 57 | 9.8 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 10 | 69738412 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 7207811 | Bmd90 | Bone mineral density QTL 90 | 5.2 | | femur size trait (VT:1000369) | femoral neck cross-sectional area (CMO:0001697) | 10 | 49444551 | 81709989 | Rat | n/a | region | qtl |
| 1000 | 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 51770177 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 61387 | Bp1 | Blood pressure QTL 1 | 5.1 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 51770177 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 61463 | Bp12 | Blood pressure QTL 12 | 6.3 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 41333258 | 86333258 | Rat | n/a | region | qtl |
| 1000 | 631555 | Bp134 | Blood pressure QTL 134 | | 0.001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 80515287 | 91230079 | Rat | n/a | region | qtl |
| 1000 | 634312 | Bp143 | Blood pressure QTL 143 | 3 | 0.0002 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 182623426 | 219932796 | Rat | n/a | region | qtl |
| 1000 | 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 94642644 | 214537671 | Rat | n/a | region | qtl |
| 1000 | 737977 | Bp160 | Blood pressure QTL 160 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 181133855 | 226133855 | Rat | n/a | region | qtl |
| 1000 | 1298069 | Bp168 | Blood pressure QTL 168 | 5.5 | | blood pressure trait (VT:0000183) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98003205 | Rat | n/a | region | qtl |
| 1000 | 1331790 | Bp201 | Blood pressure QTL 201 | 3.127 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 198211513 | 225126682 | Rat | n/a | region | qtl |
| 1000 | 1354606 | Bp246 | Blood pressure QTL 246 | 3.6 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 102813953 | 218753816 | Rat | n/a | region | qtl |
| 1000 | 1357344 | Bp249 | Blood pressure QTL 249 | | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 66743655 | 98003205 | Rat | n/a | region | qtl |
| 1000 | 1358898 | Bp255 | Blood pressure QTL 255 | 3.6 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 191019702 | 246062233 | Rat | n/a | region | qtl |
| 1000 | 61341 | Bp26 | Blood pressure QTL 26 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 169537671 | 214537671 | Rat | n/a | region | qtl |
| 1000 | 1358886 | Bp260 | Blood pressure QTL 260 | 3.67 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 151162766 | 225824951 | Rat | n/a | region | qtl |
| 1000 | 1579919 | Bp281 | Blood pressure QTL 281 | | 0.01 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 74372084 | 94965338 | Rat | n/a | region | qtl |
| 1000 | 1642980 | Bp300 | Blood pressure QTL 300 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68383129 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 2292220 | Bp306 | Blood pressure QTL 306 | 3.47 | 0.00087 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 164310393 | 243914901 | Rat | n/a | region | qtl |
| 1000 | 2292222 | Bp307 | Blood pressure QTL 307 | 3.06 | 0.0014 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 164310393 | 213533942 | Rat | n/a | region | qtl |
| 1000 | 2292438 | Bp311 | Blood pressure QTL 311 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 76246085 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 2325836 | Bp346 | Blood pressure QTL 346 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 76246085 | 84007272 | Rat | n/a | region | qtl |
| 1000 | 7421630 | Bp362 | Blood pressure QTL 362 | | 0.001 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 118608292 | 241799120 | Rat | n/a | region | qtl |
| 1000 | 10059600 | Bp378 | Blood pressure QTL 378 | 3.08 | 0.05 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 176869060 | 221869060 | Rat | n/a | region | qtl |
| 1000 | 10450495 | Bp383 | Blood pressure QTL 383 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 76246085 | 94965338 | Rat | n/a | region | qtl |
| 1000 | 10450498 | Bp384 | Blood pressure QTL 384 | | 0.002 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 67750049 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 61376 | Bp42 | Blood pressure QTL 42 | 23.4 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 197814409 | 242814409 | Rat | n/a | region | qtl |
| 1000 | 70363 | Bp71 | Blood pressure QTL 71 | | 0.04 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 61345276 | 81714865 | Rat | n/a | region | qtl |
| 1000 | 70364 | Bp72 | Blood pressure QTL 72 | | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 51121100 | 96121100 | Rat | n/a | region | qtl |
| 1000 | 619613 | Bp77 | Blood pressure QTL 77 | | 0.01 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 164747424 | 209747424 | Rat | n/a | region | qtl |
| 1000 | 619613 | Bp77 | Blood pressure QTL 77 | | 0.01 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 1 | 164747424 | 209747424 | Rat | n/a | region | qtl |
| 1000 | 631542 | Bp82 | Blood pressure QTL 82 | 6.8 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 26521957 | 98952741 | Rat | n/a | region | qtl |
| 1000 | 631547 | Bp87 | Blood pressure QTL 87 | 4.5 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 47369470 | 92369470 | Rat | n/a | region | qtl |
| 1000 | 61396 | Bp9 | Blood pressure QTL 9 | 4.8 | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 10 | 68420376 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 1 | 42323132 | 87323132 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 1 | 42323132 | 87323132 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 1 | 42323132 | 87323132 | Rat | n/a | region | qtl |
| 1000 | 70188 | BpQTLcluster1 | Blood pressure QTL cluster 1 | 4.864 | | arterial blood pressure trait (VT:2000000) | pulse pressure (CMO:0000292) | 1 | 42323132 | 87323132 | Rat | n/a | region | qtl |
| 1000 | 70198 | BpQTLcluster9 | Blood pressure QTL cluster 9 | 2.94 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 10 | 42323132 | 87323132 | Rat | n/a | region | qtl |
| 1000 | 1549830 | Bss1 | Bone structure and strength QTL 1 | 4.8 | | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 1 | 172609619 | 217609619 | Rat | n/a | region | qtl |
| 1000 | 2293693 | Bss22 | Bone structure and strength QTL 22 | 33.52 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 2293646 | Bss25 | Bone structure and strength QTL 25 | 10.96 | 0.0001 | femur morphology trait (VT:0000559) | femur cross-sectional area (CMO:0001661) | 10 | 69738412 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 2293673 | Bss27 | Bone structure and strength QTL 27 | 18.63 | 0.0001 | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 2293654 | Bss30 | Bone structure and strength QTL 30 | 32.65 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 2293663 | Bss33 | Bone structure and strength QTL 33 | 9.34 | 0.0001 | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 10 | 69738412 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 2293655 | Bss36 | Bone structure and strength QTL 36 | 10.66 | 0.0001 | femur strength trait (VT:0010010) | femur ultimate force (CMO:0001675) | 1 | 201554356 | 246554356 | Rat | n/a | region | qtl |
| 1000 | 2293694 | Bss38 | Bone structure and strength QTL 38 | 7.05 | 0.0001 | femur strength trait (VT:0010010) | femur stiffness (CMO:0001674) | 1 | 201554356 | 246554356 | Rat | n/a | region | qtl |
| 1000 | 2293674 | Bss39 | Bone structure and strength QTL 39 | 7.1 | 0.0001 | femur strength trait (VT:0010010) | femur total energy absorbed before break (CMO:0001677) | 1 | 201554356 | 246554356 | Rat | n/a | region | qtl |
| 1000 | 2293677 | Bss41 | Bone structure and strength QTL 41 | 9.38 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 2293698 | Bss43 | Bone structure and strength QTL 43 | 5.33 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra cross-sectional area (CMO:0001689) | 10 | 59209888 | 104209888 | Rat | n/a | region | qtl |
| 1000 | 2293689 | Bss47 | Bone structure and strength QTL 47 | 7.25 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra trabecular cross-sectional area (CMO:0001692) | 1 | 171629477 | 216629477 | Rat | n/a | region | qtl |
| 1000 | 1549831 | Bss6 | Bone structure and strength QTL 6 | 4 | | lumbar vertebra strength trait (VT:0010574) | vertebra ultimate force (CMO:0001678) | 10 | 57576521 | 102576521 | Rat | n/a | region | qtl |
| 1000 | 2313105 | Bss79 | Bone structure and strength QTL 79 | 1.8 | 0.0001 | tibia size trait (VT:0100001) | tibia midshaft cross-sectional area (CMO:0001717) | 10 | 62057807 | 107057807 | Rat | n/a | region | qtl |
| 1000 | 2313103 | Bss80 | Bone structure and strength QTL 80 | 2 | 0.0001 | tibia strength trait (VT:1000284) | tibia midshaft endosteal cross-sectional area (CMO:0001716) | 10 | 62057807 | 107057807 | Rat | n/a | region | qtl |
| 1000 | 6893357 | Bw102 | Body weight QTL 102 | 0.5 | 0.36 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 80515287 | 101325465 | Rat | n/a | region | qtl |
| 1000 | 6893366 | Bw106 | Body weight QTL 106 | 0.3 | 0.47 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 70199100 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 8694173 | Bw149 | Body weight QTL 149 | 4.38 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 10 | 44441699 | 89441699 | Rat | n/a | region | qtl |
| 1000 | 10059587 | Bw173 | Body weight QTL 173 | 3.23 | 0.025 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 202069611 | 247069611 | Rat | n/a | region | qtl |
| 1000 | 70163 | Bw20 | Body weight QTL 20 | 5.1 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 174133260 | 219133260 | Rat | n/a | region | qtl |
| 1000 | 70164 | Bw21 | Body weight QTL 21 | 4.36 | 0.00005 | body mass (VT:0001259) | body weight (CMO:0000012) | 10 | 53797494 | 98952626 | Rat | n/a | region | qtl |
| 1000 | 1354661 | Bw33 | Body weight QTL 33 | 5.2 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 151162512 | 256448636 | Rat | n/a | region | qtl |
| 1000 | 1354610 | Bw34 | Body weight QTL 34 | 4.1 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 151162512 | 256448636 | Rat | n/a | region | qtl |
| 1000 | 1358294 | Bw37 | Body weight QTL 37 | 5 | 0.000011 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 171310381 | 216310381 | Rat | n/a | region | qtl |
| 1000 | 1357335 | Bw39 | Body weight QTL 39 | 3.3 | | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 197814409 | 242814409 | Rat | n/a | region | qtl |
| 1000 | 1558658 | Bw59 | Body weight QTL 59 | 3.5 | 0.0003 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 178784622 | 223784622 | Rat | n/a | region | qtl |
| 1000 | 631214 | Bw61 | Body weight QTL61 | 3.4 | 0.0001 | intramuscular adipose amount (VT:0010044) | intramuscular fat area (CMO:0001162) | 1 | 173108781 | 218108781 | Rat | n/a | region | qtl |
| 1000 | 2302375 | Bw83 | Body weight QTL 83 | 4.87 | 0.0002 | body mass (VT:0001259) | body weight (CMO:0000012) | 1 | 197697768 | 242697768 | Rat | n/a | region | qtl |
| 1000 | 70171 | Cari1 | Carrageenan-induced inflammation QTL 1 | 4.9 | 0.0005 | hypodermis integrity trait (VT:0010550) | inflammatory exudate volume (CMO:0001429) | 10 | 53797385 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 61427 | Cia16 | Collagen induced arthritis QTL 16 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 6357896 | 96121100 | Rat | n/a | region | qtl |
| 1000 | 631267 | Cia20 | Collagen induced arthritis QTL 20 | 3.2 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 631268 | Cia21 | Collagen induced arthritis QTL 21 | 3.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 14487011 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 631269 | Cia22 | Collagen induced arthritis QTL 22 | 8.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 631270 | Cia23 | Collagen induced arthritis QTL 23 | 3.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 40035094 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 1302404 | Cia27 | Collagen induced arthritis QTL 27 | 2.6 | 0.0045 | joint integrity trait (VT:0010548) | experimental arthritis severity measurement (CMO:0001459) | 10 | 76452683 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 61449 | Ciaa2 | CIA Autoantibody QTL 2 | 7.1 | | blood autoantibody amount (VT:0003725) | calculated serum anti-type 2 collagen antibody titer (CMO:0001279) | 10 | 63221094 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 12880053 | Cm104 | Cardiac mass QTL 104 | | 0.009 | heart right ventricle mass (VT:0007033) | heart right ventricle weight to body weight ratio (CMO:0000914) | 10 | 73452992 | 83463334 | Rat | n/a | region | qtl |
| 1000 | 1331791 | Cm31 | Cardiac mass QTL 31 | 3.84606 | | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 29299504 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 1354608 | Cm33 | Cardiac mass QTL 33 | 2.8 | | heart left ventricle mass (VT:0007031) | heart left ventricle wet weight (CMO:0000071) | 10 | 54809292 | 99809292 | Rat | n/a | region | qtl |
| 1000 | 1354624 | Cm35 | Cardiac mass QTL35 | 5.7 | | heart left ventricle mass (VT:0007031) | calculated heart weight (CMO:0000073) | 1 | 177227632 | 256448636 | Rat | n/a | region | qtl |
| 1000 | 1358292 | Cm37 | Cardiac mass QTL 37 | 6.2 | 0.00000081 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 1 | 196248093 | 241248093 | Rat | n/a | region | qtl |
| 1000 | 1558643 | Cm44 | Cardiac mass QTL 44 | 4.8 | 0.0000368 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 10 | 61345276 | 99703528 | Rat | n/a | region | qtl |
| 1000 | 631535 | Cm51 | Cardiac mass QTL 51 | 3 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 10 | 51786282 | 91669536 | Rat | n/a | region | qtl |
| 1000 | 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | 0.0001 | heart mass (VT:0007028) | heart wet weight (CMO:0000069) | 1 | 81591954 | 219808434 | Rat | n/a | region | qtl |
| 1000 | 631658 | Cm7 | Cardiac mass QTL 7 | 5.32 | 0.0001 | aorta mass (VT:0002845) | aorta weight (CMO:0000076) | 1 | 196248093 | 241248093 | Rat | n/a | region | qtl |
| 1000 | 2301967 | Cm73 | Cardiac mass QTL 73 | 4.55 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight to body weight ratio (CMO:0000530) | 10 | 14487011 | 89062041 | Rat | n/a | region | qtl |
| 1000 | 6893336 | Cm75 | Cardiac mass QTL 75 | 0.1 | 0.87 | heart mass (VT:0007028) | heart weight to body weight ratio (CMO:0000074) | 10 | 61345276 | 99703528 | Rat | n/a | region | qtl |
| 1000 | 7771612 | Cm80 | Cardiac mass QTL 80 | 8.4 | | heart left ventricle mass (VT:0007031) | heart left ventricle weight (CMO:0000776) | 1 | 149448574 | 221264292 | Rat | n/a | region | qtl |
| 1000 | 1354653 | Despr9 | Despair related QTL 9 | | 0.00019 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 1 | 167909849 | 212909849 | Rat | n/a | region | qtl |
| 1000 | 2306793 | Ean5 | Experimental allergic neuritis QTL 5 | 4.7 | | nervous system integrity trait (VT:0010566) | IFNG-secreting splenocyte count (CMO:0002122) | 10 | 72552416 | 93995749 | Rat | n/a | region | qtl |
| 1000 | 2298481 | Eau9 | Experimental allergic uveoretinitis QTL 9 | | 0.0169 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 10 | 65927233 | 82565079 | Rat | n/a | region | qtl |
| 1000 | 8552891 | Epfw5 | Epididymal fat weight QTL 5 | 4.4 | | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 1 | 193113876 | 238113876 | Rat | n/a | region | qtl |
| 1000 | 9589030 | Epfw9 | Epididymal fat weight QTL 9 | 19.24 | 0.001 | epididymal fat pad mass (VT:0010421) | epididymal fat pad weight to body weight ratio (CMO:0000658) | 10 | 44441699 | 89441699 | Rat | n/a | region | qtl |
| 1000 | 1358191 | Ept10 | Estrogen-induced pituitary tumorigenesis QTL 10 | 3.8 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 1 | 192825253 | 243914732 | Rat | n/a | region | qtl |
| 1000 | 2292617 | Ept18 | Estrogen-induced pituitary tumorigenesis QTL 18 | 3.9 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 10 | 73453136 | 96120911 | Rat | n/a | region | qtl |
| 1000 | 1358188 | Ept9 | Estrogen-induced pituitary tumorigenesis QTL 9 | 3.9 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 10 | 73453136 | 96120911 | Rat | n/a | region | qtl |
| 1000 | 7411614 | Foco18 | Food consumption QTL 18 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 10 | 44441699 | 89441699 | Rat | n/a | region | qtl |
| 1000 | 2312564 | Glom18 | Glomerulus QTL 18 | 2.4 | 0.003 | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 1 | 185356336 | 231689108 | Rat | n/a | region | qtl |
| 1000 | 2316949 | Gluco60 | Glucose level QTL 60 | 3.7 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 14487011 | 107057807 | Rat | n/a | region | qtl |
| 1000 | 634321 | Hc1 | Hypercalciuria QTL 1 | 2.91 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 1 | 178810256 | 240830002 | Rat | n/a | region | qtl |
| 1000 | 1600363 | Hc6 | Hypercalciuria QTL 6 | 2.7 | | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 1 | 203995416 | 244113296 | Rat | n/a | region | qtl |
| 1000 | 1549837 | Hcar15 | Hepatocarcinoma resistance QTL 15 | | 0.05 | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 153136852 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 634338 | Hcar4 | Hepatocarcinoma resistance QTL 4 | 4.6 | | liver integrity trait (VT:0010547) | liver tumorous lesion number to liver area ratio (CMO:0001210) | 1 | 193422268 | 214537671 | Rat | n/a | region | qtl |
| 1000 | 737828 | Hcas3 | Hepatocarcinoma susceptibility QTL 3 | 4.9 | | liver integrity trait (VT:0010547) | liver tumorous lesion volume to total liver volume ratio (CMO:0001082) | 1 | 144267353 | 222987745 | Rat | n/a | region | qtl |
| 1000 | 738032 | Hcas5 | Hepatocarcinoma susceptibility QTL 5 | 3.12 | | liver integrity trait (VT:0010547) | liver tumorous lesion number (CMO:0001068) | 1 | 176426412 | 257976495 | Rat | n/a | region | qtl |
| 1000 | 2300218 | Hpcl2 | Hepatic cholesterol level QTL 2 | | | liver cholesterol amount (VT:0010498) | liver cholesterol level (CMO:0001597) | 10 | 45029650 | 95600334 | Rat | n/a | region | qtl |
| 1000 | 1359017 | Hrtrt21 | Heart rate QTL 21 | 2.4 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 10 | 51772940 | 96772940 | Rat | n/a | region | qtl |
| 1000 | 2293083 | Iddm25 | Insulin dependent diabetes mellitus QTL 25 | 4.18 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 181829673 | 224569684 | Rat | n/a | region | qtl |
| 1000 | 2302378 | Insul11 | Insulin level QTL 11 | 3.25 | | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 1 | 144267353 | 251128347 | Rat | n/a | region | qtl |
| 1000 | 2312672 | Insul15 | Insulin level QTL 15 | | 0.01 | blood insulin amount (VT:0001560) | serum insulin level (CMO:0000358) | 10 | 57134272 | 102134272 | Rat | n/a | region | qtl |
| 1000 | 1354646 | Kidm18 | Kidney mass QTL 18 | 5.7 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 151162512 | 256448636 | Rat | n/a | region | qtl |
| 1000 | 1354652 | Kidm20 | Kidney mass QTL 20 | 4.3 | | kidney mass (VT:0002707) | calculated kidney weight (CMO:0000160) | 1 | 177227632 | 256448636 | Rat | n/a | region | qtl |
| 1000 | 1578763 | Kidm29 | Kidney mass QTL 29 | 3.3 | 0.0001 | kidney mass (VT:0002707) | both kidneys wet weight (CMO:0000085) | 1 | 179567751 | 260522016 | Rat | n/a | region | qtl |
| 1000 | 1582206 | Kidm33 | Kidney mass QTL 33 | 6.9 | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 1 | 188377360 | 224054420 | Rat | n/a | region | qtl |
| 1000 | 2292218 | Kidm35 | Kidney mass QTL 35 | | | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 1 | 199368955 | 224569684 | Rat | n/a | region | qtl |
| 1000 | 10059590 | Kidm44 | Kidney mass QTL 44 | 3.42 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 1 | 191033875 | 236033875 | Rat | n/a | region | qtl |
| 1000 | 2303118 | Mamtr7 | Mammary tumor resistance QTL 7 | | 0.003 | mammary gland integrity trait (VT:0010552) | mammary tumor growth rate (CMO:0000344) | 10 | 9658275 | 104670812 | Rat | n/a | region | qtl |
| 1000 | 1600374 | Mcs17 | Mammary carcinoma susceptibility QTL 17 | 3 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 1 | 197670404 | 242670404 | Rat | n/a | region | qtl |
| 1000 | 7794788 | Mcs32 | Mammary carcinoma susceptibility QTL 32 | 2.61 | | mammary gland integrity trait (VT:0010552) | mammary tumor incidence/prevalence measurement (CMO:0000946) | 1 | 115540693 | 238914717 | Rat | n/a | region | qtl |
| 1000 | 70193 | Mcs7 | Mammary carcinoma susceptibility QTL 7 | 2.38 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 10 | 72224939 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 1598853 | Memor3 | Memory QTL 3 | 4.5 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 1 | 143506580 | 212458660 | Rat | n/a | region | qtl |
| 1000 | 2298548 | Neuinf7 | Neuroinflammation QTL 7 | 3.4 | | nervous system integrity trait (VT:0010566) | spinal cord RT1-B protein level (CMO:0002132) | 10 | 72224939 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 61402 | Niddm3 | Non-insulin dependent diabetes mellitus QTL 3 | 4.58 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 10 | 61345413 | 82564856 | Rat | n/a | region | qtl |
| 1000 | 631838 | Niddm36 | Non-insulin dependent diabetes mellitus QTL 36 | | 0.01 | insulin secretion trait (VT:0003564) | calculated pancreatic islet insulin release measurement (CMO:0001217) | 1 | 184550676 | 229550676 | Rat | n/a | region | qtl |
| 1000 | 634313 | Niddm43 | Non-insulin dependent diabetes mellitus QTL 43 | | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 1 | 199050459 | 259647894 | Rat | n/a | region | qtl |
| 1000 | 1600388 | Niddm67 | Non-insulin dependent diabetes mellitus QTL 67 | 5.84 | 0.000004 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 195804352 | 257091168 | Rat | n/a | region | qtl |
| 1000 | 1600396 | Niddm68 | Non-insulin dependent diabetes mellitus QTL 68 | 4.97 | 0.0003 | blood glucose amount (VT:0000188) | blood glucose level area under curve (AUC) (CMO:0000350) | 1 | 195804352 | 257091168 | Rat | n/a | region | qtl |
| 1000 | 1600395 | Niddm69 | Non-insulin dependent diabetes mellitus QTL 69 | 4.14 | 0.0002 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 1 | 195804352 | 257091168 | Rat | n/a | region | qtl |
| 1000 | 1600380 | Niddm70 | Non-insulin dependent diabetes mellitus QTL 70 | 3.1 | 0.0008 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 1 | 176550523 | 221550523 | Rat | n/a | region | qtl |
| 1000 | 631537 | Oia4 | Oil induced arthritis QTL 4 | | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 75631887 | 87055282 | Rat | n/a | region | qtl |
| 1000 | 724559 | Pancm1 | Pancreatic morphology QTL 1 | 7.1 | | islet of Langerhans morphology trait (VT:0005215) | pancreatic islet damage composite score (CMO:0001156) | 1 | 181759564 | 214537555 | Rat | n/a | region | qtl |
| 1000 | 4889492 | Pancm2 | Pancreatic morphology QTL 2 | 3.2 | | pancreatic beta cell morphology trait (VT:0005217) | ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814) | 10 | 76748906 | 107211142 | Rat | n/a | region | qtl |
| 1000 | 61354 | Pia10 | Pristane induced arthritis QTL 10 | | 0.01 | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 10 | 23444813 | 104060283 | Rat | n/a | region | qtl |
| 1000 | 2312420 | Pur17 | Proteinuria QTL 17 | 7.1 | 0.0001 | urine protein amount (VT:0005160) | urine total protein excretion rate (CMO:0000756) | 1 | 156677124 | 218753816 | Rat | n/a | region | qtl |
| 1000 | 724556 | Pur2 | Proteinuria QTL 2 | 5.5 | | urine protein amount (VT:0005160) | urine protein level (CMO:0000591) | 10 | 22427500 | 90627625 | Rat | n/a | region | qtl |
| 1000 | 1578778 | Pur4 | Proteinuria QTL 4 | 3.3 | 0.003 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 1 | 150700247 | 252085048 | Rat | n/a | region | qtl |
| 1000 | 724562 | Rends1 | Renal damage susceptibility QTL 1 | | 0.05 | kidney glomerulus integrity trait (VT:0010546) | index of glomerular damage (CMO:0001135) | 1 | 169537671 | 214537671 | Rat | n/a | region | qtl |
| 1000 | 634354 | Rends3 | Renal damage susceptibility QTL 3 | | 0.05 | kidney blood vessel morphology trait (VT:0000530) | organ lesion measurement (CMO:0000677) | 10 | 79813789 | 85160854 | Rat | n/a | region | qtl |
| 1000 | 1300107 | Rf18 | Renal function QTL 18 | 3.41 | | urine output (VT:0003620) | timed urine volume (CMO:0000260) | 10 | 78775516 | 98279596 | Rat | n/a | region | qtl |
| 1000 | 1300145 | Rf7 | Renal function QTL 7 | 2.96 | | urine creatinine amount (VT:0010540) | urine creatinine level (CMO:0000125) | 1 | 185145134 | 221264292 | Rat | n/a | region | qtl |
| 1000 | 1576308 | Schws1 | Schwannoma susceptibility QTL 1 | | 0.0041 | nervous system integrity trait (VT:0010566) | percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017) | 10 | 40035094 | 102359817 | Rat | n/a | region | qtl |
| 1000 | 6903303 | Scl34 | Serum cholesterol QTL 34 | 2.5 | 0.0033 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 1 | 180359209 | 218108781 | Rat | n/a | region | qtl |
| 1000 | 1549846 | Scl47 | Serum cholesterol level QTL 47 | 3.6 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 50574707 | 95574707 | Rat | n/a | region | qtl |
| 1000 | 2312668 | Scl65 | Serum cholesterol level QTL 65 | | 0.001 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 10 | 57134272 | 102134272 | Rat | n/a | region | qtl |
| 1000 | 1354580 | Scort1 | Serum corticosterone level QTL 1 | 3.4 | | blood corticosterone amount (VT:0005345) | blood corticosterone level (CMO:0001172) | 1 | 156677124 | 256448636 | Rat | n/a | region | qtl |
| 1000 | 2312662 | Slep8 | Serum leptin concentration QTL 8 | | 0.05 | blood leptin amount (VT:0005667) | serum leptin level (CMO:0000780) | 10 | 57134272 | 102134272 | Rat | n/a | region | qtl |
| 1000 | 1302787 | Stl25 | Serum triglyceride level QTL 25 | 2.7 | 0.0073 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 1 | 180359209 | 210702199 | Rat | n/a | region | qtl |
| 1000 | 1298078 | Stresp5 | Stress response QTL 5 | 2.99 | 0.00025 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 10 | 42045676 | 104670812 | Rat | n/a | region | qtl |
| 1000 | 1358915 | Stresp7 | Stress response QTL 7 | 3.52 | | blood norepinephrine amount (VT:0005663) | plasma norepinephrine level (CMO:0001010) | 10 | 78899655 | 87307728 | Rat | n/a | region | qtl |
| 1000 | 1641926 | Teswt2 | Testicular weight QTL 2 | 2.82 | | testis mass (VT:1000644) | both testes wet weight (CMO:0000175) | 1 | 197697768 | 238755659 | Rat | n/a | region | qtl |
| 1000 | 1298084 | Thym4 | Thymus enlargement QTL 4 | 10.68 | | thymus mass (VT:0004954) | thymus weight to body weight ratio (CMO:0000612) | 1 | 197814409 | 242814409 | Rat | n/a | region | qtl |
| 1000 | 631530 | Tls3 | T-lymphoma susceptibility QTL 3 | 0 | 0.0001 | thymus integrity trait (VT:0010555) | percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911) | 10 | 51774612 | 95600334 | Rat | n/a | region | qtl |
| 1000 | 724516 | Uae17 | Urinary albumin excretion QTL 17 | 3.6 | | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 10 | 78210622 | 85220348 | Rat | n/a | region | qtl |
| 1000 | 1578759 | Uae30 | Urinary albumin excretion QTL 30 | 3.3 | 0.003 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 150700247 | 252085048 | Rat | n/a | region | qtl |
| 1000 | 7394701 | Uae46 | Urinary albumin excretion QTL 46 | 3.6 | 0.0056 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 1 | 201554356 | 246554356 | Rat | n/a | region | qtl |
| 1000 | 724531 | Uae5 | Urinary albumin excretion QTL 5 | 4 | | urine albumin amount (VT:0002871) | urine albumin level (CMO:0000130) | 1 | 150700142 | 252085212 | Rat | n/a | region | qtl |
| 1000 | 631552 | Vetf2 | Vascular elastic tissue fragility QTL 2 | 4.5 | 0.0002 | aorta elastic tissue integrity trait (VT:0010556) | artery internal elastic lamina non-tumorous lesion count (CMO:0001913) | 10 | 41142633 | 86142633 | Rat | n/a | region | qtl |