| 1000 | 1331756 | Rf34 | Renal function QTL 34 | 4.16275 | | Renal function | renal blood flow | 5 | 1 | 94516069 | Rat | n/a | region | qtl |
| 1000 | 70212 | Niddm25 | Non-insulin dependent diabetes mellitus QTL 25 | 3.54 | | Glucose level | fasting | 5 | 1 | 138272129 | Rat | n/a | region | qtl |
| 1000 | 1331771 | Rf35 | Renal function QTL 35 | 4.36965 | | Renal function | renal blood flow | 5 | 378448 | 90620456 | Rat | n/a | region | qtl |
| 1000 | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | | | Uterine inflammation | estrogen-induced | 5 | 1220773 | 79863911 | Rat | n/a | region | qtl |
| 1000 | 634305 | Mamtr1 | Mammary tumor resistance QTL 1 | | .0001 | Mammary tumor resistance | 7,12-dimethylbenzanthracene induced | 5 | 12880403 | 119333229 | Rat | n/a | region | qtl |
| 1000 | 2316959 | Gluco59 | Glucose level QTL 59 | 4.7 | | Glucose level | postprandial | 5 | 17517235 | 119332868 | Rat | n/a | region | qtl |
| 1000 | 1578766 | Tcas11 | Tongue tumor susceptibility QTL 11 | 4.12 | | Tongue tumor susceptibility | tongue tumor number | 5 | 17517235 | 168005953 | Rat | n/a | region | qtl |
| 1000 | 1358353 | Srcrtb2 | Stress Responsive Cort Basal QTL 2 | 3.48 | .003 | Hypothalamic-pituitary-adrenal axis | corticosterone | 5 | 19206257 | 77484299 | Rat | n/a | region | qtl |
| 1000 | 1578776 | Stresp18 | Stress response QTL 18 | 2.9 | | Stress response | thymus weight | 5 | 30030683 | 75030683 | Rat | n/a | region | qtl |
| 1000 | 6903292 | Stl28 | Serum triglyceride level QTL 28 | 2.6 | .0073 | Lipid level | triglyceride level | 5 | 30606308 | 75606308 | Rat | n/a | region | qtl |
| 1000 | 6903306 | Scl35 | Serum cholesterol QTL 35 | 2.6 | .0073 | Lipid level | cholesterol level | 5 | 30606308 | 75606308 | Rat | n/a | region | qtl |
| 1000 | 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | Lipid level | cholesterol level | 5 | 32701659 | 138272129 | Rat | n/a | region | qtl |
| 1000 | 1331782 | Rf36 | Renal function QTL 36 | 3.296 | | Renal function | renal blood flow | 5 | 35390492 | 101506667 | Rat | n/a | region | qtl |
| 1000 | 1298067 | Scl15 | Serum cholesterol level QTL 15 | 4.8 | .001 | Lipid level | cholesterol | 5 | 35474610 | 80474610 | Rat | n/a | region | qtl |
| 1000 | 1302786 | Kidm8 | Kidney mass QTL 8 | 28.15 | | Kidney mass | | 5 | 35474610 | 80474610 | Rat | n/a | region | qtl |
| 1000 | 1598807 | Glom12 | Glomerulus QTL 12 | 2.7 | | Renal pathology | glomerular injury score | 5 | 35474610 | 80474610 | Rat | n/a | region | qtl |
| 1000 | 1576317 | Eutr2 | Estrogen induced uterine response QTL 2 | | .01 | Uterine inflammation | estrogen-induced | 5 | 35911094 | 109163425 | Rat | n/a | region | qtl |
| 1000 | 1641922 | Alcrsp8 | Alcohol response QTL 8 | | | Alcohol response | blood ethanol concentration | 5 | 36386126 | 71377566 | Rat | n/a | region | qtl |
| 1000 | 1641912 | Alcrsp18 | Alcohol response QTL 18 | | | Alcohol response | loss of righting reflex | 5 | 36386126 | 148460381 | Rat | n/a | region | qtl |
| 1000 | 1549845 | Scl44 | Serum cholesterol level QTL 44 | 6 | | Lipid level | serum cholesterol, post dietary | 5 | 41498818 | 155121024 | Rat | n/a | region | qtl |
| 1000 | 1331773 | Scl26 | Serum cholesterol QTL 26 | 3.065 | | Lipid level | cholesterol | 5 | 45499364 | 90620456 | Rat | n/a | region | qtl |
| 1000 | 1331801 | Rf33 | Renal function QTL 33 | 4.149 | | Renal function | renal vascular resistance | 5 | 45499364 | 135916908 | Rat | n/a | region | qtl |
| 1000 | 1300115 | Hrtrt7 | Heart rate QTL 7 | 2.76 | | Heart rate | salt-loaded | 5 | 49767270 | 89261520 | Rat | n/a | region | qtl |
| 1000 | 1576312 | Emca8 | Estrogen-induced mammary cancer QTL 8 | 4.1 | | Mammary tumor susceptibility | estradiol-induced | 5 | 52434178 | 148460381 | Rat | n/a | region | qtl |
| 1000 | 2303615 | Vencon7 | Ventilatory control QTL 7 | | .001 | Ventilatory control | re-oxygenation after hypoxia | 5 | 54207464 | 99207464 | Rat | n/a | region | qtl |
| 1000 | 2303574 | Gluco42 | Glucose level QTL 42 | 2 | | Glucose level | fasting | 5 | 57040762 | 102040762 | Rat | n/a | region | qtl |
| 1000 | 61359 | Eaex | Experimental allergic encephalomyelitis QTL x | 3 | | Brain/spinal cord inflammation | onset of disease | 5 | 57974567 | 102974567 | Rat | n/a | region | qtl |
| 1000 | 70189 | Mcs5 | Mammary carcinoma susceptibility QTL 5 | 10.51 | | Mammary tumor susceptibility | | 5 | 58063971 | 139156771 | Rat | n/a | region | qtl |
| 1000 | 1358895 | Bp254 | Blood pressure QTL 254 | 3.6 | .0003 | Blood pressure | mean arterial | 5 | 61080077 | 134872385 | Rat | n/a | region | qtl |
| 1000 | 61426 | Scl2 | Serum cholesterol level QTL 2 | 7.3 | .001 | Lipid level | cholesterol | 5 | 62098646 | 149757440 | Rat | n/a | region | qtl |
| 1000 | 2316954 | Rf57 | Renal function QTL 57 | 7 | | Renal function | | 5 | 62098775 | 94515803 | Rat | n/a | region | qtl |
| 1000 | 2316957 | Pur21 | Proteinuria QTL 21 | 6.2 | | Renal function | urine protein level | 5 | 62098775 | 119332868 | Rat | n/a | region | qtl |
| 1000 | 61386 | Bp49 | Blood pressure QTL 49 | 16.6 | | Blood pressure | | 5 | 62555131 | 103059258 | Rat | n/a | region | qtl |
| 1000 | 61393 | Bp7 | Blood pressure QTL 7 | 4.5 | .0001 | Blood pressure | salt-loaded systolic | 5 | 62555131 | 168174140 | Rat | n/a | region | qtl |