| 1000 | 61334 | Gluco17 | Glucose level QTL 17 | 6.3 | | Glucose level | uptake | 12 | 1 | 12240883 | Rat | n/a | region | qtl |
| 1000 | 1357337 | Gluco3 | Glucose level QTL 3 | 1.9 | | Glucose level | insulin-mediated glucose uptake | 12 | 1 | 12240883 | Rat | n/a | region | qtl |
| 1000 | 2303568 | Bw88 | Body weight QTL 88 | 3 | | Body weight | | 12 | 1 | 25457135 | Rat | n/a | region | qtl |
| 1000 | 6893681 | Bw109 | Body weight QTL 109 | 2.3 | .004 | Body weight | salt-loaded | 12 | 1 | 25938641 | Rat | n/a | region | qtl |
| 1000 | 61331 | Eau2 | Experimental allergic uveoretinitis QTL 2 | | .0005 | Uvea inflammation score | | 12 | 1 | 29130348 | Rat | n/a | region | qtl |
| 1000 | 1598855 | Bp294 | Blood pressure QTL 294 | 3.5 | | Blood pressure | systolic | 12 | 1 | 35270263 | Rat | n/a | region | qtl |
| 1000 | 2303575 | Insul14 | Insulin level QTL 14 | 4 | | Insulin level | | 12 | 1 | 43562201 | Rat | n/a | region | qtl |
| 1000 | 724526 | Uae3 | Urinary albumin excretion QTL 3 | 4.9 | .0001 | Renal function | urine albumin level | 12 | 155313 | 10701201 | Rat | n/a | region | qtl |
| 1000 | 737979 | Pia22 | Pristane induced arthritis QTL 22 | 53.1 | | Joint/bone inflammation | arthritis severity | 12 | 530865 | 45530865 | Rat | n/a | region | qtl |
| 1000 | 631521 | Pia12 | Pristane induced arthritis QTL 12 | 8.9 | | Joint/bone inflammation | arthritis severity | 12 | 555108 | 24748499 | Rat | n/a | region | qtl |
| 1000 | 61416 | Pia4 | Pristane induced arthritis QTL 4 | 8.4 | | Joint/bone inflammation | number of affected paws | 12 | 568621 | 45568621 | Rat | n/a | region | qtl |
| 1000 | 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | IL-6 level | pristane induced | 12 | 568621 | 45568621 | Rat | n/a | region | qtl |
| 1000 | 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | .001 | Joint/bone inflammation | pristane induced | 12 | 568621 | 45568621 | Rat | n/a | region | qtl |
| 1000 | 2312418 | Kidm41 | Kidney mass QTL 41 | 3.7 | .0001 | Kidney mass | | 12 | 665384 | 20932760 | Rat | n/a | region | qtl |
| 1000 | 634350 | Apr4 | Acute phase response QTL 4 | 6 | | Alpha1 acid glycoprotein level | pristane induced | 12 | 2248421 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 1300174 | Bw15 | Body weight QTL 15 | 2.93 | | Body weight | salt-loaded | 12 | 2957061 | 9628971 | Rat | n/a | region | qtl |
| 1000 | 61421 | Cia12 | Collagen induced arthritis QTL 12 | 4.6 | | Joint/bone inflammation | type II collagen induced | 12 | 7148164 | 36894750 | Rat | n/a | region | qtl |
| 1000 | 1581516 | Cm56 | Cardiac mass QTL 56 | 4.2 | .05 | Cardiac mass | left ventricle | 12 | 7382953 | 12240754 | Rat | n/a | region | qtl |
| 1000 | 1600391 | Edcs2 | Endometrial carcinoma susceptibility QTL2 | 3.5 | .01 | Endometrial tumor susceptibility | | 12 | 7382953 | 27853771 | Rat | n/a | region | qtl |
| 1000 | 1302792 | Scl21 | Serum cholesterol QTL 21 | 3.8 | .0011 | Lipid level | cholesterol | 12 | 7754826 | 25802539 | Rat | n/a | region | qtl |
| 1000 | 2293086 | Iddm30 | Insulin dependent diabetes mellitus QTL 30 | 3.42 | | Glucose level | insulin-dependent | 12 | 8901318 | 29369703 | Rat | n/a | region | qtl |
| 1000 | 1331739 | Hrtrt14 | Heart rate QTL 14 | 3.56232 | | Heart rate | | 12 | 9628802 | 17773949 | Rat | n/a | region | qtl |
| 1000 | 1300157 | Rf21 | Renal function QTL 21 | 4.42 | | Renal function | salt-loaded renal blood flow | 12 | 9628802 | 33216334 | Rat | n/a | region | qtl |
| 1000 | 1549829 | Scl48 | Serum cholesterol level QTL 48 | 5 | | Lipid level | baseline serum cholesterol | 12 | 10716230 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 1331786 | Kidm11 | Kidney mass QTL 11 | 3.571 | | Kidney mass | right kidney mass | 12 | 11416955 | 25271941 | Rat | n/a | region | qtl |
| 1000 | 1331755 | Bp219 | Blood pressure QTL 219 | 3.041 | | Blood pressure | mean arterial | 12 | 11416955 | 29130304 | Rat | n/a | region | qtl |
| 1000 | 1331761 | Bp218 | Blood pressure QTL 218 | 2.973 | | Blood pressure | mean arterial | 12 | 11416955 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 2293699 | Bss49 | Bone structure and strength QTL 49 | 5.61 | .0001 | Bone structure | | 12 | 11612769 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 2300186 | Bmd59 | Bone mineral density QTL 59 | 7.1 | .0001 | Bone mineral density | | 12 | 11612769 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 61404 | Bw120 | Body weight QTL 120 | 5.1 | | Body weight | body mass index | 12 | 12770194 | 42387195 | Rat | n/a | region | qtl |
| 1000 | 1641928 | Alcrsp5 | Alcohol response QTL 5 | | | Alcohol response | loss of righting reflex | 12 | 13948769 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 2303569 | Gluco44 | Glucose level QTL 44 | 2 | | Glucose level | fasting | 12 | 13948769 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 2302060 | Pia37 | Pristane induced arthritis QTL 37 | 6.1 | .001 | Joint/bone inflammation | pristane induced | 12 | 14334630 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 1549902 | Bp269 | Blood pressure QTL 269 | | | Blood pressure | diastolic, daytime | 12 | 14356765 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 1549912 | Bp268 | Blood pressure QTL 268 | | | Blood pressure | diastolic, daytime | 10 | 14356765 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 61443 | Btemp2 | Thermal response to stress QTL 2 | 3.3 | | Body temperature | under stress | 12 | 15508819 | 21911223 | Rat | n/a | region | qtl |
| 1000 | 2293684 | Bmd26 | Bone mineral density QTL 26 | 4.4 | .0002 | Bone mineral density | | 12 | 16387455 | 34112949 | Rat | n/a | region | qtl |
| 1000 | 631543 | Bp83 | Blood pressure QTL 83 | 5.8 | | Blood pressure | systolic | 12 | 16535858 | 39626712 | Rat | n/a | region | qtl |
| 1000 | 70213 | Niddm27 | Non-insulin dependent diabetes mellitus QTL 27 | 3.72 | | Glucose level | fasting | 12 | 18937438 | 39323046 | Rat | n/a | region | qtl |
| 1000 | 631560 | Apr1 | Acute phase response QTL 1 | 6.1 | | Alpha1 acid glycoprotein level | pristane induced | 12 | 20418353 | 46782294 | Rat | n/a | region | qtl |
| 1000 | 1298081 | Cia25 | Collagen induced arthritis QTL 25 | 4.7 | | Joint/bone inflammation | arthritis severity | 12 | 20932555 | 36894750 | Rat | n/a | region | qtl |
| 1000 | 61324 | Eae5 | Experimental allergic encephalomyelitis QTL 5 | 13 | | Brain/spinal cord inflammation | relapsing disease | 12 | 20932559 | 24470522 | Rat | n/a | region | qtl |
| 1000 | 2306789 | Ean6 | Experimental allergic neuritis QTL 6 | 4.9 | | Peripheral nerve inflammation | demyelination | 12 | 20932559 | 25367251 | Rat | n/a | region | qtl |
| 1000 | 737822 | Alc10 | Alcohol consumption QTL 10 | 2.2 | | Consumption level | alcohol preference | 12 | 20932559 | 41447890 | Rat | n/a | region | qtl |
| 1000 | 5684888 | Pia42 | Pristane induced arthritis QTL 42 | | | Joint/bone inflammation | pristane induced | 12 | 20932559 | 43863270 | Rat | n/a | region | qtl |
| 1000 | 1331763 | Wbc2 | White blood cell count QTL 2 | 3.162 | | White blood cell count | | 12 | 25271823 | 32988661 | Rat | n/a | region | qtl |
| 1000 | 70169 | Eae13 | Experimental allergic encephalomyelitis QTL 13 | | .032 | Brain/spinal cord inflammation | demyelination | 12 | 25367251 | 37906389 | Rat | n/a | region | qtl |
| 1000 | 1556747 | Calcic1 | Intracellular calcium level QTL 1 | | 3.6 | Intracellular calcium level | thrombin-stimulated | 12 | 29130180 | 42387195 | Rat | n/a | region | qtl |
| 1000 | 1600386 | Calcic2 | Intracellular calcium level QTL 2 | | .001 | Intracellular calcium level | thrombin-stimulated | 12 | 29130180 | 42387195 | Rat | n/a | region | qtl |
| 1000 | 1300175 | Cm5 | Cardiac mass QTL 5 | 3.78 | | Cardiac mass | salt-loaded left ventricle | 12 | 29130180 | 46043557 | Rat | n/a | region | qtl |
| 1000 | 1331787 | Rf41 | Renal function QTL 41 | 2.998 | | Renal function | renal blood flow | 12 | 29130304 | 41447755 | Rat | n/a | region | qtl |
| 1000 | 631829 | Alc6 | Alcohol consumption QTL 6 | 4.7 | | Consumption level | alcohol preference | 12 | 29675888 | 39018219 | Rat | n/a | region | qtl |
| 1000 | 1300162 | Bp188 | Blood pressure QTL 188 | 3.19 | | Blood pressure | salt-loaded systolic | 12 | 33216127 | 46043557 | Rat | n/a | region | qtl |