| 631688 | Hcas2 | Hepatocarcinoma susceptibility QTL 2 | 3 | .0001 | Liver tumor susceptibility | nodule number | 1 | 6253946 | 116153262 | Rat | n/a | region | qtl |
| 2313062 | Bmd73 | Bone mineral density QTL 73 | 3.9 | .0001 | Bone mineral density | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 2313065 | Bss67 | Bone structure and strength QTL 67 | 3.1 | .0001 | Bone structure | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 2313069 | Bss68 | Bone structure and strength QTL 68 | 2.9 | .0001 | Bone structure | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 2313075 | Bss66 | Bone structure and strength QTL 66 | 3.4 | .0001 | Bone structure | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 2313077 | Bss69 | Bone structure and strength QTL 69 | 3.5 | .0001 | Bone strength | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 2313092 | Bmd72 | Bone mineral density QTL 72 | 2.5 | .0001 | Bone mineral density | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 2313097 | Bss70 | Bone structure and strength QTL 70 | 3.5 | .0001 | Bone strength | | 1 | 11859997 | 81947972 | Rat | n/a | region | qtl |
| 631495 | Bp96 | Blood pressure QTL 96 | 4.52 | | Blood pressure | systolic | 1 | 22842898 | 102532417 | Rat | n/a | region | qtl |
| 1358192 | Ept13 | Estrogen-induced pituitary tumorigenesis QTL 13 | 3.4 | | Gland mass | pituitary | 1 | 23633441 | 77148378 | Rat | n/a | region | qtl |
| 1358359 | Sradr1 | Stress Responsive Adrenal Weight QTL 1 | 4.74 | | Hypothalamic-pituitary-adrenal axis | adrenal gland weight | 1 | 28716493 | 124749065 | Rat | n/a | region | qtl |
| 1331785 | Rf27 | Renal function QTL 27 | 4.643 | | Renal function | urine sodium concentration | 1 | 29683182 | 78134446 | Rat | n/a | region | qtl |
| 1331732 | Srn4 | Serum renin concentration QTL 4 | 4.467 | | Renin concentration | serum | 1 | 33134446 | 78134446 | Rat | n/a | region | qtl |
| 1331792 | Rf29 | Renal function QTL 29 | 4.589 | | Renal function | urine potassium concentration | 1 | 33134446 | 78134446 | Rat | n/a | region | qtl |
| 61433 | Cia2 | Collagen induced arthritis QTL 2 | 5 | | Joint/bone inflammation | arthritis severity | 1 | 33153323 | 78153323 | Rat | n/a | region | qtl |
| 2313051 | Bss57 | Bone structure and strength QTL 57 | 3.7 | .0001 | Bone strength | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 2313059 | Bss55 | Bone structure and strength QTL 55 | 3.2 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 2313072 | Bss53 | Bone structure and strength QTL 53 | 4.3 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 2313078 | Bss54 | Bone structure and strength QTL 54 | 3.5 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 2313094 | Bss58 | Bone structure and strength QTL 58 | 3.7 | .0001 | Bone strength | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 2313098 | Bmd70 | Bone mineral density QTL 70 | 3.6 | .0001 | Bone mineral density | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 2313099 | Bss56 | Bone structure and strength QTL 56 | 2.4 | .0001 | Bone structure | | 1 | 37646940 | 119780561 | Rat | n/a | region | qtl |
| 1331778 | Rf28 | Renal function QTL 28 | 4.66 | | Renal function | potassium excretion rate | 1 | 40204051 | 78134446 | Rat | n/a | region | qtl |
| 2302059 | Pia36 | Pristane induced arthritis QTL 36 | 3.8 | .001 | Joint/bone inflammation | pristane induced | 1 | 41645883 | 86645883 | Rat | n/a | region | qtl |
| 2313402 | Anxrr24 | Anxiety related response QTL 24 | | | Anxiety response | domestication | 1 | 43426139 | 146971983 | Rat | n/a | region | qtl |
| 4889962 | Bss94 | Bone structure and strength QTL 94 | 3.8 | | Bone structure | | 1 | 43840481 | 81947972 | Rat | n/a | region | qtl |
| 1578649 | Bmd8 | Bone mineral density QTL 8 | 4.9 | | Bone mineral density | femoral neck trabecular vBMD | 1 | 43872710 | 88872710 | Rat | n/a | region | qtl |
| 1578654 | Bss10 | Bone structure and strength QTL 10 | 4 | | Bone structure | femoral neck cortical area | 1 | 43872710 | 162735928 | Rat | n/a | region | qtl |
| 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | Glucose level | | 1 | 43872827 | 204280278 | Rat | n/a | region | qtl |
| 4889919 | Bss86 | Bone structure and strength QTL 86 | 4.1 | | Bone structure | | 1 | 48777689 | 81947972 | Rat | n/a | region | qtl |
| 4889929 | Bss87 | Bone structure and strength QTL 87 | 6.7 | | Bone structure | | 1 | 48777689 | 81947972 | Rat | n/a | region | qtl |
| 6903308 | Scl36 | Serum cholesterol QTL 36 | 2 | .0125 | Lipid level | cholesterol level | 1 | 53013200 | 90306478 | Rat | n/a | region | qtl |
| 2298545 | Neuinf8 | Neuroinflammation QTL 8 | 2.9 | | Neuroinflammation | | 1 | 55083934 | 154002647 | Rat | n/a | region | qtl |
| 2300324 | Fetw1 | Fetal weight QTL 1 | 12.1 | .005 | Fetal weight | | 1 | 55540384 | 100540384 | Rat | n/a | region | qtl |
| 2300164 | Bmd44 | Bone mineral density QTL 44 | 5.4 | .0001 | Bone mineral density | | 1 | 56601368 | 101601368 | Rat | n/a | region | qtl |
| 1300121 | Hrtrt1 | Heart rate QTL 1 | 3.7 | | Heart rate | salt-loaded | 1 | 64744882 | 116153262 | Rat | n/a | region | qtl |
| 631512 | Scl6 | Serum cholesterol level QTL 6 | 9.6 | | Lipid level | cholesterol | 1 | 71659707 | 90282193 | Rat | n/a | region | qtl |
