| 1000 | 631199 | Cm23 | Cardiac mass QTL 23 | 4.6 | .0004 | Cardiac mass | left ventricle | 1 | 134980682 | 176854992 | Rat | n/a | region | qtl |
| 1000 | 631202 | Gluco13 | Glucose level QTL 13 | | .0001 | Glucose level | postprandial | 1 | 133566530 | 163141556 | Rat | n/a | region | qtl |
| 1000 | 631205 | Bp196 | Blood pressure QTL 196 | 4 | .0001 | Blood pressure | mean arterial | 1 | 119780561 | 204280278 | Rat | n/a | region | qtl |
| 1000 | 631206 | Niddm40 | Non-insulin dependent diabetes mellitus QTL 40 | | | Glucose level | postprandial | 1 | 139026999 | 167337781 | Rat | n/a | region | qtl |
| 1000 | 631496 | Bp97 | Blood pressure QTL 97 | 3.08 | | Blood pressure | systolic | 1 | 106445165 | 163516043 | Rat | n/a | region | qtl |
| 1000 | 634314 | Niddm44 | Non-insulin dependent diabetes mellitus QTL 44 | | | Glucose level | | 1 | 43872827 | 204280278 | Rat | n/a | region | qtl |
| 1000 | 631544 | Bp84 | Blood pressure QTL 84 | 5.6 | | Blood pressure | systolic | 1 | 124614679 | 186391887 | Rat | n/a | region | qtl |
| 1000 | 61442 | Strs1 | Sensitivity to stroke QTL 1 | 7.4 | | Stroke susceptibility | latency until stroke | 1 | 124471914 | 169471914 | Rat | n/a | region | qtl |
| 1000 | 1358902 | Bw47 | Body weight QTL 47 | 1.67 | | Body weight | | 1 | 90282040 | 184857893 | Rat | n/a | region | qtl |
| 1000 | 634348 | Bp138 | Blood pressure QTL 138 | | | Blood pressure | | 1 | 126938969 | 172691061 | Rat | n/a | region | qtl |
| 1000 | 631549 | Bp89 | Blood pressure QTL 89 | 5.7 | | Blood pressure | | 1 | 124614852 | 206574205 | Rat | n/a | region | qtl |
| 1000 | 61341 | Bp26 | Blood pressure QTL 26 | | | Blood pressure | | 1 | 146971846 | 202915231 | Rat | n/a | region | qtl |
| 1000 | 61379 | Bp44 | Blood pressure QTL 44 | 19.2 | | Blood pressure | | 1 | 146971983 | 178054386 | Rat | n/a | region | qtl |
| 1000 | 70160 | Bw18 | Body weight QTL 18 | 5.7 | | Body weight | | 1 | 146971846 | 201472944 | Rat | n/a | region | qtl |
| 1000 | 631654 | Bp107 | Blood pressure QTL 107 | | | Blood pressure | systolic | 1 | 126938969 | 185923619 | Rat | n/a | region | qtl |
| 1000 | 724521 | Uae1 | Urinary albumin excretion QTL 1 | 3.8 | .0001 | Renal function | urine albumin level | 1 | 90282040 | 185923619 | Rat | n/a | region | qtl |
| 1000 | 631684 | Bp117 | Blood pressure QTL 117 | 8.3 | | Blood pressure | systolic | 1 | 112480604 | 157480604 | Rat | n/a | region | qtl |
| 1000 | 724562 | Rends1 | Renal damage susceptibility QTL 1 | | .05 | Renal histology | renal lesion severity | 1 | 146971846 | 202915231 | Rat | n/a | region | qtl |
| 1000 | 731168 | Bp154 | Blood pressure QTL 154 | 3.4 | | Blood pressure | systolic | 1 | 94624828 | 220639653 | Rat | n/a | region | qtl |
| 1000 | 724529 | Cm16 | Cardiac mass QTL 16 | 2.7 | | Cardiac mass | | 1 | 87465281 | 153578547 | Rat | n/a | region | qtl |
| 1000 | 724550 | Thym3 | Thymus enlargement QTL 3 | 7.82 | .001 | Gland mass | thymus | 1 | 141471946 | 186471946 | Rat | n/a | region | qtl |
| 1000 | 737828 | Hcas3 | Hepatocarcinoma susceptibility QTL 3 | 4.9 | | Liver tumor susceptibility | nodule number | 1 | 146971846 | 228781113 | Rat | n/a | region | qtl |
| 1000 | 738006 | Anxrr14 | Anxiety related response QTL 14 | 4 | .00035 | Anxiety response | plus maze-open arm | 1 | 133624682 | 178624682 | Rat | n/a | region | qtl |
| 1000 | 737977 | Bp160 | Blood pressure QTL 160 | | .001 | Blood pressure | systolic | 1 | 134980682 | 185690881 | Rat | n/a | region | qtl |
| 1000 | 738028 | Anxrr12 | Anxiety related response QTL 12 | 4.9 | .00001 | Anxiety response | plus maze-center | 1 | 133624682 | 178624682 | Rat | n/a | region | qtl |
| 1000 | 634315 | Niddm45 | Non-insulin dependent diabetes mellitus QTL 45 | 7.16 | | Glucose level | postprandial | 1 | 146971983 | 176854992 | Rat | n/a | region | qtl |
| 1000 | 70209 | Niddm23 | Non-insulin dependent diabetes mellitus QTL 23 | 2.82 | | Glucose level | fasting | 1 | 94473940 | 203416143 | Rat | n/a | region | qtl |
| 1000 | 1300158 | Bp173 | Blood pressure QTL 173 | 3.48 | | Blood pressure | salt-loaded time series calculation | 1 | 115946374 | 189900838 | Rat | n/a | region | qtl |
| 1000 | 1354606 | Bp246 | Blood pressure QTL 246 | 3.6 | | Blood pressure | pulse pressure | 1 | 103149923 | 224426393 | Rat | n/a | region | qtl |
| 1000 | 1354623 | Rf46 | Renal function QTL 46 | 3.8 | | Creatinine level | serum | 1 | 103149923 | 154075310 | Rat | n/a | region | qtl |
| 1000 | 1331793 | Bp200 | Blood pressure QTL 200 | 3.71601 | | Blood pressure | systolic | 1 | 94473940 | 176855135 | Rat | n/a | region | qtl |
| 1000 | 1354591 | Cm36 | Cardiac mass QTL 36 | 4.1 | | Cardiac mass | left ventricle adjusted for tibia length | 1 | 103149923 | 206567907 | Rat | n/a | region | qtl |
| 1000 | 1354615 | Cm32 | Cardiac mass QTL 32 | 5.2 | | Cardiac mass | left ventricle | 1 | 103149923 | 206567907 | Rat | n/a | region | qtl |
| 1000 | 1331749 | Hrtrt11 | Heart rate QTL 11 | 2.973 | | Heart rate | | 1 | 94473940 | 203303100 | Rat | n/a | region | qtl |
| 1000 | 1331751 | Bp199 | Blood pressure QTL 199 | 3.60022 | | Blood pressure | diastolic | 1 | 94473940 | 186472032 | Rat | n/a | region | qtl |
| 1000 | 1358189 | Cstrr1 | Cold stress response QTL 1 | | .0001 | Hormone level | norepinephrine | 1 | 124614679 | 187092492 | Rat | n/a | region | qtl |
| 1000 | 1598853 | Memor3 | Memory QTL 3 | 4.5 | | Memory | navigation-spatial | 1 | 146189650 | 218467340 | Rat | n/a | region | qtl |
| 1000 | 1578654 | Bss10 | Bone structure and strength QTL 10 | 4 | | Bone structure | femoral neck cortical area | 1 | 43872710 | 162735928 | Rat | n/a | region | qtl |
| 1000 | 1578770 | Stresp23 | Stress response QTL 23 | | | Stress response | sympathetic hyperreactivity to air-jet stress | 1 | 124614679 | 187092492 | Rat | n/a | region | qtl |
| 1000 | 1578780 | Cm52 | Cardiac mass QTL 52 | 3.3 | .0001 | Cardiac mass | | 1 | 81342810 | 225814178 | Rat | n/a | region | qtl |
| 1000 | 1641895 | Bp298 | Blood pressure QTL 298 | | | Blood pressure | mean arterial | 1 | 124614679 | 187092492 | Rat | n/a | region | qtl |
| 1000 | 1598850 | Bp297 | Blood pressure QTL 297 | 2.1 | | Blood pressure | systolic | 1 | 123689796 | 168689796 | Rat | n/a | region | qtl |
| 1000 | 2293140 | Bp313 | Blood pressure QTL 313 | | | Blood pressure | systolic | 1 | 122991895 | 167991895 | Rat | n/a | region | qtl |
| 1000 | 1598866 | Bp287 | Blood pressure QTL 287 | 5.1 | | Blood pressure | systolic | 1 | 123689796 | 168689796 | Rat | n/a | region | qtl |
| 1000 | 1600363 | Hc6 | Hypercalciuria QTL 6 | 2.7 | | Renal function | calcium excretion | 1 | 112148733 | 250430505 | Rat | n/a | region | qtl |
| 1000 | 2298545 | Neuinf8 | Neuroinflammation QTL 8 | 2.9 | | Neuroinflammation | | 1 | 55083934 | 154002647 | Rat | n/a | region | qtl |
| 1000 | 2302378 | Insul11 | Insulin level QTL 11 | 3.25 | | Insulin level | | 1 | 146971846 | 247322277 | Rat | n/a | region | qtl |
| 1000 | 2313060 | Bss71 | Bone structure and strength QTL 71 | 2.6 | .0001 | Bone structure | | 1 | 119780411 | 186391852 | Rat | n/a | region | qtl |
| 1000 | 6893361 | Bw104 | Body weight QTL 104 | .59 | .27 | Body weight | | 1 | 136792830 | 181792830 | Rat | n/a | region | qtl |
| 1000 | 6893347 | Bw98 | Body weight QTL 98 | .2 | .53 | Body weight | | 1 | 136792830 | 181792830 | Rat | n/a | region | qtl |
| 1000 | 1558645 | Bw55 | Body weight QTL 55 | 3.2 | .004 | Body weight | | 1 | 136792830 | 181792830 | Rat | n/a | region | qtl |
| 1000 | 71118 | Thym1 | Thymus enlargement QTL 1 | 10.68 | .001 | Gland mass | thymus | 1 | 141471946 | 186471946 | Rat | n/a | region | qtl |
| 1000 | 631519 | Pia11 | Pristane induced arthritis QTL 11 | 5.3 | | Joint/bone inflammation | arthritis severity | 1 | 83489176 | 186472032 | Rat | n/a | region | qtl |