| 1000 | 619616 | Bp79 | Blood pressure QTL 79 | | .0292 | Blood pressure | systolic | 4 | 456799 | 78039637 | Rat | n/a | region | qtl |
| 1000 | 2303168 | Bp330 | Blood pressure QTL 330 | 4.25 | .017 | Blood pressure | | 4 | 456799 | 149181446 | Rat | n/a | region | qtl |
| 1000 | 1358203 | Stl19 | Serum triglyceride level QTL 19 | 2.8 | .002 | Lipid level | triglyceride | 4 | 460493 | 64750077 | Rat | n/a | region | qtl |
| 1000 | 631261 | Tcas3 | Tongue tumor susceptibility QTL 3 | 6 | | Tongue tumor susceptibility | | 4 | 6179441 | 91330582 | Rat | n/a | region | qtl |
| 1000 | 2316958 | Gluco58 | Glucose level QTL 58 | 10 | | Glucose level | postprandial | 4 | 6690606 | 185398530 | Rat | n/a | region | qtl |
| 1000 | 1358352 | Srcrt3 | Stress Responsive Cort QTL 3 | 2.29 | | Hypothalamic-pituitary-adrenal axis | corticosterone post-stress | 4 | 8819982 | 149560340 | Rat | n/a | region | qtl |
| 1000 | 6909122 | Insul22 | Insulin level QTL 22 | 4.63 | | Insulin level | fasting | 4 | 23537363 | 74625985 | Rat | n/a | region | qtl |
| 1000 | 6909128 | Pancm4 | Pancreatic morphology QTL 4 | 11.35 | | Pancreas weight | | 4 | 23537363 | 74625985 | Rat | n/a | region | qtl |
| 1000 | 61475 | Aia2 | Adjuvant induced arthritis QTL 2 | 5.8 | | Joint/bone inflammation | adjuvant induced | 4 | 36592628 | 73972591 | Rat | n/a | region | qtl |
| 1000 | 1331807 | Rf31 | Renal function QTL 31 | 2.988 | | Renal function | urine potassium concentration | 4 | 36611842 | 73752590 | Rat | n/a | region | qtl |
| 1000 | 1300139 | Hrtrt6 | Heart rate QTL 6 | 2.85 | | Heart rate | salt-loaded | 4 | 36611842 | 117887968 | Rat | n/a | region | qtl |
| 1000 | 61445 | Strs3 | Sensitivity to stroke QTL 3 | 3 | | Stroke susceptibility | latency until stroke | 4 | 39146794 | 84146794 | Rat | n/a | region | qtl |
| 1000 | 1576305 | Emca6 | Estrogen-induced mammary cancer QTL 6 | 5.8 | | Mammary tumor susceptibility | estradiol-induced | 4 | 41729583 | 159115617 | Rat | n/a | region | qtl |
| 1000 | 1354612 | Foco1 | Food consumption QTL 1 | 8.87 | | Consumption level | food intake | 4 | 41729771 | 151158666 | Rat | n/a | region | qtl |
| 1000 | 1354660 | Salc1 | Saline consumption QTL 1 | 11.26 | | Consumption level | saline intake | 4 | 41729771 | 151158666 | Rat | n/a | region | qtl |
| 1000 | 6893678 | Bw108 | Body weight QTL 108 | 2.6 | .006 | Body weight | salt-loaded | 4 | 42249950 | 87249950 | Rat | n/a | region | qtl |
| 1000 | 2312567 | Glom19 | Glomerulus QTL 19 | 1.9 | .006 | Renal pathology | | 4 | 43686352 | 149560340 | Rat | n/a | region | qtl |
| 1000 | 1298082 | Stresp4 | Stress response QTL 4 | | | Hormone level | corticosterone | 4 | 47889730 | 149560340 | Rat | n/a | region | qtl |
| 1000 | 4889969 | Bss96 | Bone structure and strength QTL 96 | 4.9 | | Bone structure | | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |
| 1000 | 4889972 | Bss97 | Bone structure and strength QTL 97 | 5.6 | | Bone structure | | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |
| 1000 | 5685009 | Bmd86 | Bone mineral density QTL 86 | 3.7 | | Bone mineral density | areal bone mineral density | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |
| 1000 | 5685012 | Bmd87 | Bone mineral density QTL 87 | 5.1 | | Bone mineral density | bone mineral content | 4 | 54828069 | 78039637 | Rat | n/a | region | qtl |
| 1000 | 70200 | Alc18 | Alcohol consumption QTL 18 | 9.2 | | Consumption level | alcohol preference | 4 | 54828166 | 152570244 | Rat | n/a | region | qtl |
| 1000 | 1641833 | Alc21 | Alcohol consumption QTL 21 | 8.6 | .0001 | Consumption level | alcohol preference | 4 | 54879077 | 127941994 | Rat | n/a | region | qtl |
| 1000 | 634311 | Sach7 | Saccharin preference QTL 7 | | | Consumption level | saccharin preference | 4 | 55369931 | 80464927 | Rat | n/a | region | qtl |
| 1000 | 631546 | Bp86 | Blood pressure QTL 86 | 3.2 | | Blood pressure | systolic | 4 | 55369931 | 91330856 | Rat | n/a | region | qtl |
| 1000 | 61336 | Bp21 | Blood pressure QTL 21 | 4.6 | | Blood pressure | salt-loaded systolic | 4 | 55370202 | 78038013 | Rat | n/a | region | qtl |
| 1000 | 1358363 | Sradr3 | Stress Responsive Adrenal Weight QTL 3 | 6.19 | | Hypothalamic-pituitary-adrenal axis | adrenal gland weight | 4 | 56690161 | 101690161 | Rat | n/a | region | qtl |
| 1000 | 1558651 | Swd3 | Spike wave discharge measurement QTL 3 | 4.62 | .000024 | Spike wave discharge measurement | frequency | 4 | 56704868 | 91916048 | Rat | n/a | region | qtl |
| 1000 | 631671 | Iddm11 | Insulin dependent diabetes mellitus QTL 11 | 3.6 | .0012 | Glucose level | | 4 | 56920444 | 78042833 | Rat | n/a | region | qtl |
| 1000 | 738009 | Sach4 | Saccharine consumption QTL 4 | 4.9 | .000016 | Consumption level | saccharin preference | 4 | 58421110 | 158108528 | Rat | n/a | region | qtl |
| 1000 | 738016 | Alc16 | Alcohol consumption QTL 16 | 3.6 | .00015 | Consumption level | alcohol preference | 4 | 58421110 | 158108528 | Rat | n/a | region | qtl |
| 1000 | 738031 | Alc14 | Alcohol consumption QTL 14 | 7.6 | .00003 | Consumption level | alcohol preference | 4 | 58421110 | 158108528 | Rat | n/a | region | qtl |
| 1000 | 634344 | Hcar7 | Hepatocarcinoma resistance QTL 7 | 7.8 | | Liver tumor resistance | 3-methyl-4-dimethylaminoazobenzene induced | 4 | 58550170 | 93498821 | Rat | n/a | region | qtl |
| 1000 | 2300179 | Bmd50 | Bone mineral density QTL 50 | 5.9 | .0001 | Bone mineral density | | 4 | 60200806 | 105200806 | Rat | n/a | region | qtl |
| 1000 | 1549843 | Bw53 | Body weight QTL 53 | | .0001 | Body weight | | 4 | 60262965 | 104415981 | Rat | n/a | region | qtl |
| 1000 | 1549839 | Bw52 | Body weight QTL 52 | | .0001 | Body weight | | 4 | 60262965 | 116780394 | Rat | n/a | region | qtl |
| 1000 | 61418 | Pia5 | Pristane induced arthritis QTL 5 | 4.5 | | Joint/bone inflammation | inflammation score | 4 | 60974346 | 130228614 | Rat | n/a | region | qtl |
| 1000 | 1578657 | Bss12 | Bone structure and strength QTL 12 | 8.9 | | Bone structure | femoral neck total area | 4 | 61483655 | 106483655 | Rat | n/a | region | qtl |
| 1000 | 1578658 | Bss13 | Bone structure and strength QTL 13 | 8 | | Bone structure | femoral neck polar moment of inertia (Ip) | 4 | 61483655 | 106483655 | Rat | n/a | region | qtl |
| 1000 | 70192 | BpQTLcluster5 | Blood pressure QTL cluster 5 | 2.6 | | Blood pressure | | 4 | 61646915 | 116611046 | Rat | n/a | region | qtl |