| 1301913 | Frp3_m | free running period 3 (mouse) | | | Not determined | | 12 | 29217345 | 63217465 | Mouse | n/a | region | qtl |
| 1301047 | Bglq9_m | body growth late QTL 9 (mouse) | | | Not determined | | 12 | 30214889 | 64215088 | Mouse | n/a | region | qtl |
| 1300636 | Gct2_m | granulosa cell tumorigenesis 2 (mouse) | | | Not determined | | 12 | 30214889 | 64215088 | Mouse | n/a | region | qtl |
| 4141843 | Moen3_m | modifier of engrailed QTL 3 (mouse) | | | Not determined | | 12 | 30855788 | 64855937 | Mouse | n/a | region | qtl |
| 4142002 | Tbqt3_m | tibia bone quality traits 3 (mouse) | | | Not determined | | 12 | 35920169 | 111208019 | Mouse | n/a | region | qtl |
| 4142266 | Ascla6_m | atherosclerotic lesion area 6 (mouse) | | | Not determined | | 12 | 38072816 | 72073013 | Mouse | n/a | region | qtl |
| 1300843 | Aaq2_m | alcohol acceptance QTL 2 (mouse) | | | Not determined | | 12 | 44756236 | 78756354 | Mouse | n/a | region | qtl |
| 1357757 | Lnopy2_m | lens opacity 2 (mouse) | | | Not determined | | 12 | 53900839 | 87901009 | Mouse | n/a | region | qtl |
| 1357749 | Vtbt13_m | vertebral trabecular bone trait 13 (mouse) | | | Not determined | | 12 | 54186215 | 88186358 | Mouse | n/a | region | qtl |
| 1300598 | Disso1_m | dissociation of activity 1 (mouse) | | | Not determined | | 12 | 55099552 | 89099672 | Mouse | n/a | region | qtl |
| 1301001 | Daq7_m | directional asymmetry QTL 7 (mouse) | | | Not determined | | 12 | 55355580 | 89355719 | Mouse | n/a | region | qtl |
| 4141397 | Adip16_m | adiposity 16 (mouse) | | | Not determined | | 12 | 55843829 | 89843980 | Mouse | n/a | region | qtl |
| 4140993 | Tglq2b_m | triglyceride QTL 2b (mouse) | | | Not determined | | 12 | 56392448 | 90392662 | Mouse | n/a | region | qtl |
| 4141628 | Tglq2_m | triglyceride QTL 2 (mouse) | | | Not determined | | 12 | 56392448 | 90392662 | Mouse | n/a | region | qtl |