| 1000 | 69647 | Eif4e | eukaryotic translation initiation factor 4E | | 2 | 227066519 | 227099261 | Rat | n/a | Region | gene |
| 999 | 70968 | Ddah1 | dimethylarginine dimethylaminohydrolase 1 | | 2 | 234667499 | 234800322 | Rat | n/a | Region | gene |
| 998 | 2265 | Calm2-ps1 | calmodulin 2, pseudogene 1 | | 2 | 239897888 | 239899007 | Rat | n/a | Region | gene |
| 997 | 2044 | Adh1c | alcohol dehydrogenase 1C (class I), gamma polypeptide | | 2 | 226797303 | 226808892 | Rat | n/a | Region | gene |
| 996 | 619735 | Gtf2b | general transcription factor IIB | | 2 | 231767317 | 231785626 | Rat | n/a | Region | gene |
| 995 | 3436 | Ptgfr | prostaglandin F receptor | | 2 | 240731185 | 240766674 | Rat | n/a | Region | gene |
| 994 | 70901 | Dnase2b | deoxyribonuclease 2 beta | | 2 | 235470915 | 235515211 | Rat | n/a | Region | gene |
| 993 | 621076 | Pdlim5 | PDZ and LIM domain 5 | | 2 | 230952251 | 231120329 | Rat | n/a | Region | gene |
| 992 | 621291 | Selenof | selenoprotein F | | 2 | 233642075 | 233674853 | Rat | n/a | Region | gene |
| 991 | 621338 | Ctbs | chitobiase | | 2 | 235340520 | 235355091 | Rat | n/a | Region | gene |
| 990 | 621638 | Adh7 | alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide | | 2 | 226748724 | 226763183 | Rat | n/a | Region | gene |
| 989 | 708490 | Ssx2ip | SSX family member 2 interacting protein | | 2 | 235298012 | 235330750 | Rat | n/a | Region | gene |
| 988 | 620146 | Pkn2 | protein kinase N2 | | 2 | 231793584 | 231898953 | Rat | n/a | Region | gene |
| 987 | 620095 | Pdha2 | pyruvate dehydrogenase E1 subunit alpha 2 | | 2 | 229872300 | 229873848 | Rat | n/a | Region | gene |
| 986 | 620565 | Lpar3 | lysophosphatidic acid receptor 3 | | 2 | 235125234 | 235193916 | Rat | n/a | Region | gene |
| 985 | 620763 | Ccn1 | cellular communication network factor 1 | | 2 | 234562410 | 234565370 | Rat | n/a | Region | gene |
| 984 | 621369 | Uox | urate oxidase | | 2 | 235486867 | 235523053 | Rat | n/a | Region | gene |
| 983 | 620544 | Bcl10 | BCL10, immune signaling adaptor | | 2 | 234840880 | 234850520 | Rat | n/a | Region | gene |
| 982 | 708544 | Samd13 | sterile alpha motif domain containing 13 | | 2 | 235534699 | 235540527 | Rat | n/a | Region | gene |
| 981 | 1303234 | Clca4 | chloride channel accessory 4 | | 2 | 233883625 | 233904993 | Rat | n/a | Region | gene |
| 980 | 1304859 | Sh3glb1 | SH3 domain -containing GRB2-like endophilin B1 | | 2 | 233750838 | 233784817 | Rat | n/a | Region | gene |
| 979 | 1303176 | Tspan5 | tetraspanin 5 | | 2 | 227294180 | 227469361 | Rat | n/a | Region | gene |
| 978 | 621136 | Adgrl4 | adhesion G protein-coupled receptor L4 | | 2 | 240354909 | 240457231 | Rat | n/a | Region | gene |
| 977 | 620835 | Adgrl2 | adhesion G protein-coupled receptor L2 | | 2 | 237696055 | 238327141 | Rat | n/a | Region | gene |
| 976 | 621100 | Clca5 | chloride channel accessory 5 | | 2 | 233796569 | 233818867 | Rat | n/a | Region | gene |
| 975 | 620807 | Gng5 | G protein subunit gamma 5 | | 2 | 235394680 | 235403177 | Rat | n/a | Region | gene |
| 974 | 735109 | Unc5c | unc-5 netrin receptor C | | 2 | 230180353 | 230535219 | Rat | n/a | Region | gene |
| 973 | 621810 | Gbp2 | guanylate binding protein 2 | | 2 | 231332488 | 231348573 | Rat | n/a | Region | gene |
| 972 | 1306313 | Adh6 | alcohol dehydrogenase 6 (class V) | | 2 | 226903208 | 226934564 | Rat | n/a | Region | gene |
| 971 | 1305826 | Dnajb4 | DnaJ heat shock protein family (Hsp40) member B4 | | 2 | 241129346 | 241159272 | Rat | n/a | Region | gene |
| 970 | 1306258 | Clca1 | chloride channel accessory 1 | | 2 | 233938677 | 233964369 | Rat | n/a | Region | gene |
| 969 | 1307133 | Lamtor3 | late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 | | 2 | 226411389 | 226423612 | Rat | n/a | Region | gene |
| 968 | 1308558 | Rap1gds1 | Rap1 GTPase-GDP dissociation stimulator 1 | | 2 | 227500366 | 227645213 | Rat | n/a | Region | gene |
| 967 | 1305366 | Hs2st1 | heparan sulfate 2-O-sulfotransferase 1 | | 2 | 233508018 | 233641769 | Rat | n/a | Region | gene |
| 966 | 1304894 | Clca2 | chloride channel accessory 2 | | 2 | 233993619 | 234022691 | Rat | n/a | Region | gene |
| 965 | 1310029 | Adh6a | alcohol dehydrogenase 6A (class V) | | 2 | 226823775 | 226846005 | Rat | n/a | Region | gene |
| 964 | 1305545 | Metap1 | methionyl aminopeptidase 1 | | 2 | 226991305 | 227024360 | Rat | n/a | Region | gene |
| 963 | 1310523 | Ifi44 | interferon-induced protein 44 | | 2 | 240626058 | 240643879 | Rat | n/a | Region | gene |
| 962 | 1308388 | Mttp | microsomal triglyceride transfer protein | | 2 | 226613090 | 226654239 | Rat | n/a | Region | gene |
| 961 | 1311877 | Gbp1 | guanylate binding protein 1 | | 2 | 231398136 | 231432773 | Rat | n/a | Region | gene |
| 960 | 1310189 | Dapp1 | dual adaptor of phosphotyrosine and 3-phosphoinositides 1 | | 2 | 226425890 | 226475445 | Rat | n/a | Region | gene |
| 959 | 1305670 | Lmo4 | LIM domain only 4 | | 2 | 233264180 | 233280881 | Rat | n/a | Region | gene |
| 958 | 1308723 | Znhit6 | zinc finger, HIT-type containing 6 | | 2 | 234486686 | 234517952 | Rat | n/a | Region | gene |
| 957 | 1308884 | Mcoln2 | mucolipin TRP cation channel 2 | | 2 | 235053816 | 235102703 | Rat | n/a | Region | gene |
| 956 | 1309170 | C2h4orf17 | similar to human chromosome 4 open reading frame 17 | | 2 | 226693808 | 226722277 | Rat | n/a | Region | gene |
| 955 | 1310574 | Prkacb | protein kinase cAMP-activated catalytic subunit beta | | 2 | 235636878 | 235726928 | Rat | n/a | Region | gene |
| 954 | 1310579 | Gbp4 | guanylate binding protein 4 | | 2 | 231304910 | 231318883 | Rat | n/a | Region | gene |
| 953 | 71028 | Adh4 | alcohol dehydrogenase 4 (class II), pi polypeptide | | 2 | 226948717 | 226966747 | Rat | n/a | Region | gene |
| 952 | 1560590 | Hspa8-ps20 | heat shock protein family A (Hsp70) member 8, pseudogene 20 | | 2 | 227488250 | 227490321 | Rat | n/a | Region | gene |
| 951 | 1559755 | Rpf1 | ribosome production factor 1 | | 2 | 235403020 | 235417546 | Rat | n/a | Region | gene |
| 950 | 1563105 | Dnai3 | dynein axonemal intermediate chain 3 | | 2 | 234947910 | 235006173 | Rat | n/a | Region | gene |
| 949 | 1560801 | Gbp1-ps1 | guanylate binding protein 1, pseudogene 1 | | 2 | 231517485 | 231525865 | Rat | n/a | Region | gene |
| 948 | 1564206 | Syde2 | synapse defective Rho GTPase homolog 2 | | 2 | 234897975 | 234930994 | Rat | n/a | Region | gene |
| 947 | 1359500 | Spata1 | spermatogenesis associated 1 | | 2 | 235349126 | 235394578 | Rat | n/a | Region | gene |
| 946 | 1359262 | Kyat3 | kynurenine aminotransferase 3 | | 2 | 231701881 | 231747462 | Rat | n/a | Region | gene |
| 945 | 1311040 | Gbp5 | guanylate binding protein 5 | | 2 | 231237748 | 231257071 | Rat | n/a | Region | gene |
| 944 | 1560751 | Gipc2 | GIPC PDZ domain containing family, member 2 | | 2 | 241030764 | 241110236 | Rat | n/a | Region | gene |
| 943 | 1584233 | Gbp6-ps2 | guanylate binding protein 6, pseudogene 2 | | 2 | 231643579 | 231672818 | Rat | n/a | Region | gene |
| 942 | 1560065 | C2h1orf52 | similar to human chromosome 1 open reading frame 52 | | 2 | 234853378 | 234860045 | Rat | n/a | Region | gene |
| 941 | 1584721 | Metap2-ps4 | methionyl aminopeptidase 2, pseudogene 4 | | 2 | 226738713 | 226740586 | Rat | n/a | Region | gene |
| 940 | 1585253 | Ptp4a1l2 | protein tyrosine phosphatase 4A1 like 2 | | 2 | 240806880 | 240807884 | Rat | n/a | Region | gene |
| 939 | 1566117 | Ttll7 | tubulin tyrosine ligase like 7 | | 2 | 235765786 | 235889047 | Rat | n/a | Region | gene |
| 938 | 1565539 | Col24a1 | collagen type XXIV alpha 1 chain | | 2 | 234212256 | 234469445 | Rat | n/a | Region | gene |
| 937 | 1590825 | Rps10-ps14 | ribosomal protein S10, pseudogene 14 | | 2 | 228301082 | 228301564 | Rat | n/a | Region | gene |
| 936 | 1590827 | Nlk-ps1 | nemo like kinase, pseudogene 1 | | 2 | 226517676 | 226519713 | Rat | n/a | Region | gene |
| 935 | 1583235 | Gbp7 | guanylate binding protein 7 | | 2 | 231275521 | 231297289 | Rat | n/a | Region | gene |
| 934 | 1591945 | Clca4l | chloride channel calcium activated 4-like | | 2 | 233826133 | 233846137 | Rat | n/a | Region | gene |
| 933 | 1591946 | Stpg2 | sperm-tail PG-rich repeat containing 2 | | 2 | 227764266 | 228285664 | Rat | n/a | Region | gene |
| 932 | 1591948 | Mindy3-ps1 | MINDY lysine 48 deubiquitinase 3, pseudogene 1 | | 2 | 226521817 | 226527142 | Rat | n/a | Region | gene |
| 931 | 1591949 | Dnajb14 | DnaJ heat shock protein family (Hsp40) member B14 | | 2 | 226358988 | 226409461 | Rat | n/a | Region | gene |
| 930 | 1593831 | Odf2l | outer dense fiber of sperm tails 2-like | | 2 | 234036049 | 234072751 | Rat | n/a | Region | gene |
| 929 | 1594565 | Trmt10a | tRNA methyltransferase 10A | | 2 | 226669445 | 226684166 | Rat | n/a | Region | gene |
| 928 | 1595861 | Ifi44l | interferon-induced protein 44-like | | 2 | 240668742 | 240706425 | Rat | n/a | Region | gene |
| 927 | 1595863 | Bmpr1b | bone morphogenetic protein receptor type 1B | | 2 | 230538252 | 230871077 | Rat | n/a | Region | gene |
| 926 | 1591892 | Fubp1 | far upstream element binding protein 1 | | 2 | 241159481 | 241186591 | Rat | n/a | Region | gene |
| 925 | 1308420 | Mcoln3 | mucolipin TRP cation channel 3 | | 2 | 235008716 | 235042885 | Rat | n/a | Region | gene |
| 924 | 1597766 | Gbp3 | guanylate binding protein 3 | | 2 | 231460032 | 231500266 | Rat | n/a | Region | gene |
| 923 | 1595864 | Adh1-ps1 | alcohol dehydrogenase 1C (class I), gamma polypeptide, pseudogene 1 | | 2 | 226862836 | 226881171 | Rat | n/a | Region | gene |
| 922 | 2292706 | Adh5 | alcohol dehydrogenase 5 (class III), chi polypeptide | | 2 | 226975184 | 226987591 | Rat | n/a | Region | gene |
| 921 | 2321664 | Aspscr1-ps1 | ASPSCR1 tether for SLC2A4, UBX domain containing, pseudogene 1 | | 2 | 228792286 | 228793721 | Rat | n/a | Region | gene |
| 920 | 2320955 | Esd-ps1 | esterase D, pseudogene 1 | | 2 | 237054176 | 237055006 | Rat | n/a | Region | gene |
| 919 | 6496054 | Cycs-ps2 | cytochrome c, somatic, pseudogene 2 | | 2 | 228057525 | 228059101 | Rat | n/a | Region | gene |
| 918 | 7526141 | LOC102547649 | uncharacterized LOC102547649 | | 2 | 238137914 | 238161725 | Rat | n/a | Region | gene |
| 917 | 7508827 | LOC102548237 | uncharacterized LOC102548237 | | 2 | 239641025 | 239655905 | Rat | n/a | Region | gene |
| 916 | 7633711 | LOC102546938 | uncharacterized LOC102546938 | | 2 | 232552428 | 232604876 | Rat | n/a | Region | gene |
| 915 | 7597955 | LOC102549483 | uncharacterized LOC102549483 | | 2 | 233490907 | 233505798 | Rat | n/a | Region | gene |
| 914 | 7588281 | LOC102548701 | uncharacterized LOC102548701 | | 2 | 240942249 | 240945720 | Rat | n/a | Region | gene |
| 913 | 7563133 | LOC102547779 | uncharacterized LOC102547779 | | 2 | 238387843 | 238393363 | Rat | n/a | Region | gene |
| 912 | 7603781 | LOC102547949 | uncharacterized LOC102547949 | | 2 | 238524961 | 238644513 | Rat | n/a | Region | gene |
| 911 | 7566012 | LOC102548042 | uncharacterized LOC102548042 | | 2 | 239209201 | 239226143 | Rat | n/a | Region | gene |
| 910 | 7695964 | C2h4orf54 | similar to human chromosome 4 open reading frame 54 | | 2 | 226580582 | 226599354 | Rat | n/a | Region | gene |
| 909 | 7705196 | LOC102547720 | uncharacterized LOC102547720 | | 2 | 237932068 | 237940538 | Rat | n/a | Region | gene |
| 908 | 7715322 | LOC102549543 | uncharacterized LOC102549543 | | 2 | 233826602 | 233865540 | Rat | n/a | Region | gene |
| 907 | 7740925 | LOC102546591 | uncharacterized LOC102546591 | | 2 | 231915170 | 231944275 | Rat | n/a | Region | gene |
| 906 | 7743957 | LOC102547266 | uncharacterized LOC102547266 | | 2 | 227238591 | 227271656 | Rat | n/a | Region | gene |
| 905 | 7699806 | LOC102556448 | uncharacterized LOC102556448 | | 2 | 227046507 | 227052126 | Rat | n/a | Region | gene |
| 904 | 7709092 | LOC102553018 | uncharacterized LOC102553018 | | 2 | 234565400 | 234641070 | Rat | n/a | Region | gene |
| 903 | 7750470 | LOC102555623 | uncharacterized LOC102555623 | | 2 | 226558532 | 226578601 | Rat | n/a | Region | gene |
| 902 | 7682235 | LOC102548445 | uncharacterized LOC102548445 | | 2 | 240490785 | 240503872 | Rat | n/a | Region | gene |
| 901 | 9089379 | LOC103691720 | uncharacterized LOC103691720 | | 2 | 229741900 | 229876749 | Rat | n/a | Region | gene |
| 900 | 9349957 | LOC103691736 | proteasome maturation protein pseudogene | | 2 | 240786521 | 240786947 | Rat | n/a | Region | gene |
| 899 | 9285423 | LOC103691735 | uncharacterized LOC103691735 | | 2 | 240213258 | 240214625 | Rat | n/a | Region | gene |
| 898 | 9685091 | Mir1956 | microRNA 1956 | | 2 | 227066526 | 227066588 | Rat | n/a | Region | gene |
| 897 | 11471726 | LOC108350293 | uncharacterized LOC108350293 | | 2 | 236209335 | 236213311 | Rat | n/a | Region | gene |
| 896 | 11361756 | LOC108350125 | uncharacterized LOC108350125 | | 2 | 231759164 | 231767187 | Rat | n/a | Region | gene |
| 895 | 11452044 | LOC108350126 | uncharacterized LOC108350126 | | 2 | 232084651 | 232087782 | Rat | n/a | Region | gene |
| 894 | 11424141 | LOC108350123 | uncharacterized LOC108350123 | | 2 | 226879275 | 226881249 | Rat | n/a | Region | gene |
| 893 | 11426388 | LOC108350295 | 40S ribosomal protein S6 pseudogene | | 2 | 240913042 | 240913845 | Rat | n/a | Region | gene |
| 892 | 11376688 | LOC108350139 | uncharacterized LOC108350139 | | 2 | 239342624 | 239423222 | Rat | n/a | Region | gene |
| 891 | 11512472 | LOC108350142 | 40S ribosomal protein S10 pseudogene | | 2 | 241040365 | 241053418 | Rat | n/a | Region | gene |
| 890 | 11484619 | LOC108350128 | uncharacterized LOC108350128 | | 2 | 233470949 | 233477899 | Rat | n/a | Region | gene |
| 889 | 41169203 | LOC120100962 | uncharacterized LOC120100962 | | 2 | 233642432 | 233645492 | Rat | n/a | Region | gene |
| 888 | 41141506 | LOC120101103 | uncharacterized LOC120101103 | | 2 | 237751769 | 237771224 | Rat | n/a | Region | gene |
| 887 | 41206447 | Nme2-ps3 | NME/NM23 nucleoside diphosphate kinase 2, pseudogene 3 | | 2 | 227696512 | 227697495 | Rat | n/a | Region | gene |
| 886 | 41251367 | LOC120101209 | U6 spliceosomal RNA | | 2 | 238220051 | 238220154 | Rat | n/a | Region | gene |
| 885 | 41114961 | Rnu6-777 | RNA, U6 small nuclear 777 | | 2 | 235281040 | 235281138 | Rat | n/a | Region | gene |
| 884 | 41253766 | LOC120101108 | U2 spliceosomal RNA | | 2 | 228566040 | 228566192 | Rat | n/a | Region | gene |
| 883 | 41287178 | LOC120100961 | uncharacterized LOC120100961 | | 2 | 233138097 | 233143134 | Rat | n/a | Region | gene |
| 882 | 41208624 | LOC120100960 | uncharacterized LOC120100960 | | 2 | 233102614 | 233153460 | Rat | n/a | Region | gene |
| 881 | 41361361 | LOC120100970 | uncharacterized LOC120100970 | | 2 | 239423440 | 239435136 | Rat | n/a | Region | gene |
| 880 | 41210344 | LOC120101136 | U6 spliceosomal RNA | | 2 | 228059072 | 228059178 | Rat | n/a | Region | gene |
| 879 | 41187575 | LOC120100958 | uncharacterized LOC120100958 | | 2 | 232439706 | 232462245 | Rat | n/a | Region | gene |
| 878 | 41330340 | LOC120100968 | uncharacterized LOC120100968 | | 2 | 236847492 | 236881086 | Rat | n/a | Region | gene |
| 877 | 41331959 | LOC120101220 | U7 small nuclear RNA | | 2 | 228491892 | 228491955 | Rat | n/a | Region | gene |
| 876 | 41364636 | LOC120100965 | uncharacterized LOC120100965 | | 2 | 235540646 | 235542542 | Rat | n/a | Region | gene |
| 875 | 41096450 | LOC120100956 | uncharacterized LOC120100956 | | 2 | 229528518 | 229545145 | Rat | n/a | Region | gene |
| 874 | 41121145 | LOC120101154 | U6 spliceosomal RNA | | 2 | 231513755 | 231513861 | Rat | n/a | Region | gene |
| 873 | 41097702 | LOC120100959 | uncharacterized LOC120100959 | | 2 | 232435038 | 232454741 | Rat | n/a | Region | gene |
| 872 | 41182245 | LOC120100957 | uncharacterized LOC120100957 | | 2 | 231978621 | 231987035 | Rat | n/a | Region | gene |
| 871 | 41217598 | LOC120101145 | U6 spliceosomal RNA | | 2 | 234500049 | 234500155 | Rat | n/a | Region | gene |
| 870 | 41195544 | Rnu5e-5 | RNA, U5E small nuclear 5 | | 2 | 234864277 | 234864392 | Rat | n/a | Region | gene |
| 869 | 41219769 | Rnu6-503 | RNA, U6 small nuclear 503 | | 2 | 231776535 | 231776641 | Rat | n/a | Region | gene |
| 868 | 41129485 | LOC120101272 | small nucleolar RNA SNORA48 | | 2 | 227718981 | 227719125 | Rat | n/a | Region | gene |
| 867 | 41162421 | LOC120100951 | uncharacterized LOC120100951 | | 2 | 226480844 | 226485594 | Rat | n/a | Region | gene |
| 866 | 41294353 | LOC120101101 | uncharacterized LOC120101101 | | 2 | 238222160 | 238235082 | Rat | n/a | Region | gene |
| 865 | 40946169 | Trnav-aac23 | transfer RNA valine (anticodon AAC) 23 | | 2 | 228767419 | 228767489 | Rat | n/a | Region | gene |
| 864 | 41340482 | LOC120101330 | small nucleolar RNA SNORA17 | | 2 | 237234034 | 237234163 | Rat | n/a | Region | gene |
| 863 | 40954943 | LOC120100963 | uncharacterized LOC120100963 | | 2 | 233732380 | 233740609 | Rat | n/a | Region | gene |
| 862 | 40936735 | LOC120100967 | uncharacterized LOC120100967 | | 2 | 236345988 | 236352811 | Rat | n/a | Region | gene |
| 861 | 40962343 | LOC120100964 | uncharacterized LOC120100964 | | 2 | 234780480 | 234783439 | Rat | n/a | Region | gene |
| 860 | 40988647 | LOC120100966 | uncharacterized LOC120100966 | | 2 | 235554316 | 235556702 | Rat | n/a | Region | gene |
| 859 | 40941651 | LOC120101360 | small nucleolar RNA SNORA17 | | 2 | 238885848 | 238885934 | Rat | n/a | Region | gene |
| 858 | 41024593 | LOC120100955 | uncharacterized LOC120100955 | | 2 | 227530080 | 227561990 | Rat | n/a | Region | gene |
| 857 | 41077741 | LOC120100950 | uncharacterized LOC120100950 | | 2 | 226438865 | 226442299 | Rat | n/a | Region | gene |
| 856 | 41257633 | LOC120101162 | U6 spliceosomal RNA | | 2 | 228169721 | 228169827 | Rat | n/a | Region | gene |
| 855 | 41037774 | LOC120101214 | U7 small nuclear RNA | | 2 | 240874055 | 240874116 | Rat | n/a | Region | gene |
| 854 | 41063911 | LOC120100969 | uncharacterized LOC120100969 | | 2 | 236842537 | 236851959 | Rat | n/a | Region | gene |
| 853 | 41040699 | Rpl39-ps9 | ribosomal protein L39, pseudogene 9 | | 2 | 231154550 | 231158955 | Rat | n/a | Region | gene |