| 1000 | 628670 | Ppif | peptidylprolyl isomerase F | | 16 | 1257197 | 1263919 | Rat | n/a | Region | gene |
| 999 | 621275 | Arf4 | ADP-ribosylation factor 4 | | 16 | 1896692 | 1913267 | Rat | n/a | Region | gene |
| 998 | 619990 | Dnah12 | dynein, axonemal, heavy chain 12 | | 16 | 1936354 | 2092663 | Rat | n/a | Region | gene |
| 997 | 708372 | Erc2 | ELKS/RAB6-interacting/CAST family member 2 | | 16 | 2812712 | 3673624 | Rat | n/a | Region | gene |
| 996 | 1309388 | Appl1 | adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 | | 16 | 2118503 | 2166741 | Rat | n/a | Region | gene |
| 995 | 1305689 | Tmem254 | transmembrane protein 254 | | 16 | 1503931 | 1507819 | Rat | n/a | Region | gene |
| 994 | 1306662 | Plac9 | placenta associated 9 | | 16 | 1459450 | 1474275 | Rat | n/a | Region | gene |
| 993 | 1309911 | Anxa11 | annexin A11 | | 16 | 1412373 | 1457814 | Rat | n/a | Region | gene |
| 992 | 1310975 | Pde12 | phosphodiesterase 12 | | 16 | 1920062 | 1925638 | Rat | n/a | Region | gene |
| 991 | 1306164 | Zcchc24 | zinc finger CCHC-type containing 24 | | 16 | 1274544 | 1326664 | Rat | n/a | Region | gene |
| 990 | 1307674 | Slmap | sarcolemma associated protein | | 16 | 1667205 | 1785200 | Rat | n/a | Region | gene |
| 989 | 1311620 | Zmiz1 | zinc finger, MIZ-type containing 1 | | 16 | 1027083 | 1232616 | Rat | n/a | Region | gene |
| 988 | 1306064 | Dennd6a | DENN domain containing 6A | | 16 | 1837019 | 1885420 | Rat | n/a | Region | gene |
| 987 | 1310672 | Arhgef3 | Rho guanine nucleotide exchange factor 3 | | 16 | 2301573 | 2581951 | Rat | n/a | Region | gene |
| 986 | 1563858 | Hesx1 | HESX homeobox 1 | | 16 | 2191852 | 2193957 | Rat | n/a | Region | gene |
| 985 | 1560873 | Ccdc66 | coiled-coil domain containing 66 | | 16 | 2662125 | 2694031 | Rat | n/a | Region | gene |
| 984 | 1311053 | Dux4 | double homeobox 4 | | 16 | 1558430 | 1570045 | Rat | n/a | Region | gene |
| 983 | 1565219 | Cphx1 | cytoplasmic polyadenylated homeobox 1 | | 16 | 1533883 | 1537248 | Rat | n/a | Region | gene |
| 982 | 1565017 | Dctpp1-ps2 | dCTP pyrophosphatase 1, pseudogene 2 | | 16 | 1392967 | 1393868 | Rat | n/a | Region | gene |
| 981 | 1565237 | Il17rd | interleukin 17 receptor D | | 16 | 2228438 | 2295122 | Rat | n/a | Region | gene |
| 980 | 1595469 | Tasor | transcription activation suppressor | | 16 | 2606807 | 2669902 | Rat | n/a | Region | gene |
| 979 | 1596812 | Asb14 | ankyrin repeat and SOCS box-containing 14 | | 16 | 2095567 | 2123259 | Rat | n/a | Region | gene |
| 978 | 6491687 | Dlg5l | discs large MAGUK scaffold protein 5 like | | 16 | 1627574 | 1636979 | Rat | n/a | Region | gene |
| 977 | 6502340 | Atpsckmt-ps1 | ATP synthase c subunit lysine N-methyltransferase, pseudogene 1 | | 16 | 2745087 | 2745803 | Rat | n/a | Region | gene |
| 976 | 7489016 | Mir3075 | microRNA 3075 | | 16 | 1101063 | 1101175 | Rat | n/a | Region | gene |
| 975 | 7515318 | LOC102553299 | uncharacterized LOC102553299 | | 16 | 1333271 | 1337137 | Rat | n/a | Region | gene |
| 974 | 7636032 | Envl-ps12 | MLV-related proviral Env polyprotein-like, pseudogene 12 | | 16 | 2718781 | 2727590 | Rat | n/a | Region | gene |
| 973 | 7556606 | LOC102548056 | uncharacterized LOC102548056 | | 16 | 2299708 | 2301948 | Rat | n/a | Region | gene |
| 972 | 7668173 | Aco2-ps1 | aconitase 2, pseudogene 1 | | 16 | 2899913 | 2910508 | Rat | n/a | Region | gene |
| 971 | 7728594 | Ppp1r26-ps1 | protein phosphatase 1, regulatory subunit 26, pseudogene 1 | | 16 | 2020997 | 2025203 | Rat | n/a | Region | gene |
| 970 | 9185666 | LOC103693859 | uncharacterized LOC103693859 | | 16 | 788500 | 945373 | Rat | n/a | Region | gene |
| 969 | 9247050 | Lsm5l1 | LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 | | 16 | 1339769 | 1340198 | Rat | n/a | Region | gene |
| 968 | 9302900 | LOC103693877 | PRAME family member 12 pseudogene | | 16 | 2952105 | 2958891 | Rat | n/a | Region | gene |
| 967 | 11448061 | LOC108353088 | 60S ribosomal protein L27 pseudogene | | 16 | 1240358 | 1242676 | Rat | n/a | Region | gene |
| 966 | 11422894 | LOC108348452 | uncharacterized LOC108348452 | | 16 | 2883708 | 2938011 | Rat | n/a | Region | gene |
| 965 | 11425421 | LOC108353065 | uncharacterized LOC108353065 | | 16 | 831750 | 841045 | Rat | n/a | Region | gene |
| 964 | 41173772 | LOC120097513 | uncharacterized LOC120097513 | | 16 | 2225987 | 2228141 | Rat | n/a | Region | gene |
| 963 | 41096323 | LOC120097507 | uncharacterized LOC120097507 | | 16 | 997570 | 1025164 | Rat | n/a | Region | gene |
| 962 | 41366414 | Rpl34-ps9 | ribosomal protein L34, pseudogene 9 | | 16 | 1737352 | 1765838 | Rat | n/a | Region | gene |
| 961 | 41192096 | LOC120097665 | small nucleolar RNA SNORA71 | | 16 | 1751918 | 1752049 | Rat | n/a | Region | gene |
| 960 | 40993958 | LOC120097392 | uncharacterized LOC120097392 | | 16 | 949194 | 961139 | Rat | n/a | Region | gene |
| 959 | 41244298 | LOC120097444 | uncharacterized LOC120097444 | | 16 | 1620329 | 1626184 | Rat | n/a | Region | gene |