RGD:11586138 Rat Genome Database

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Variant: RGD:11586138 -  Homo sapiens

RGD ID: 11586138
RS ID: rs200963393
ClinVar ID: CV285259
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SCN1A-AS1  SCN9A  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
GRCh37 2 167,052,322
GRCh38 2 166,195,812
JBrowse: View Region in Genome Browser (JBrowse)
Model



ClinVar Data
HGVS Name(s) Last Evaluated Molecular Consequence Clinical Significance Age of Onset Prevalence Trait Synonyms
LRG_369t1:c.*2860C>T
LRG_369:g.185176C>T
NG_012798.1:g.185176C>T
NC_000002.12:g.166195812G>A
More... 		06/14/2016 3 prime utr variant uncertain significance infancy 1-9 / 100 000|<1 / 1 000 000 ASYMBOLIA FOR PAIN; CONGENITAL ANALGESIA, AUTOSOMAL RECESSIVE; Erythermalgia, primary; Indifference to pain, congenital, autosomal recessive; Insensitivity to pain, channelopathy-associated; PAIN, SUBMANDIBULAR, OCULAR, AND RECTAL, WITH FLUSHING; RECTAL PAIN, FAMILIAL; SCN9A-Related Inherited Erythromelalgia

Variant Details
Variant Transcripts
Gene Symbol:SCN9A
Accession:NM_001365536
Location:3UTRS;EXON

Gene Symbol:SCN9A
Accession:NM_002977
Location:3UTRS;EXON

Gene Symbol:SCN9A
Accession:XM_011511617
Location:3UTRS;EXON

Gene Symbol:SCN9A
Accession:XM_011511618
Location:3UTRS;EXON

Gene Symbol:SCN9A
Accession:XM_017004669
Location:3UTRS;EXON

Gene Symbol:SCN9A
Accession:XM_011511616
Location:3UTRS;EXON

Gene Symbol:SCN9A
Accession:XM_011511619
Location:3UTRS;EXON

Gene Symbol:SCN1A-AS1
Accession:NR_110260
Location:INTRON;NON-CODING

Gene Symbol:SCN9A
Accession:XR_001738886
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
ClinVar RCV000340690 CLINVAR
  RCV000380022 CLINVAR
  RCV000383549 CLINVAR
  RCV000397721 CLINVAR
dbSNP (RS) rs200963393 CLINVAR
MedGen C0014805 CLINVAR
  C1833661 CLINVAR
  C1855739 CLINVAR
  C3276706 CLINVAR
NCBI Gene 101929680 CLINVAR
  SCN9A CLINVAR
OMIM 133020 CLINVAR
  167400 CLINVAR
  243000 CLINVAR
  603415 CLINVAR
SNOMED CT 403390002 CLINVAR