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Strain Registration

Strain: WF.COP-(D2Rat253-D2Uwm17)/Uwm

Symbol: WF.COP-(D2Rat253-D2Uwm17)/Uwm
Strain: WF.COP-(D2Rat253-D2Uwm17)
Substrain: Uwm
RGD ID: 728391
Citation ID: RRID:RGD_728391
Ontology ID: RS:0000997
Also Known As: WF.COP-(D2Rat253-D2Uwm17)/Uwm; WF.COP-D2Rat253/D2Uwm17; line K
Type: congenic
Available Source: Not Available
Origination: University of Wisconsin, Madison, Wisconsin, USA
Description: A segment of chromosome 2 was transferred from COP into the WF background. The recombinant congenic strain, line K, was derived from three Mcs1-congenic lines at various backcross generations and was produced at the N10 or N12 backcross generations by intercrossing heterozygous brother and sister pairs.
Inbred Generations: F10
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2226,559,817 - 32,374,088RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0225,012,974 - 31,224,929RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0244,171,519 - 50,382,003RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4225,663,274 - 32,051,637RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
WF.COP-(D2Rat253-D2Uwm17)/Uwm  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
mammary gland integrity trait  EXP 724790 RGD 


References

References - curated
# Reference Title Reference Citation
1. Congenic rats reveal three independent Copenhagen alleles within the Mcs1 quantitative trait locus that confer resistance to mammary cancer. Haag JD, etal., Cancer Res 2003 Sep 15;63(18):5808-12.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D2Rat253)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2226,559,817 - 26,560,006 (+)MAPPER
Rnor_6.0225,012,974 - 25,013,162NCBI
Rnor_5.0244,171,519 - 44,171,707UniSTS
RGSC_v3.4225,663,274 - 25,663,463RGD
RGSC_v3.4225,663,275 - 25,663,463UniSTS
RGSC_v3.1225,583,643 - 25,583,832RGD
Celera222,625,641 - 22,625,829UniSTS
FHH x ACI Map212.2699RGD
FHH x ACI Map212.2699UniSTS

Flank 2 / 1 (D2Uwm17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2232,373,770 - 32,374,088 (+)MAPPER
Rnor_6.0231,224,612 - 31,224,929NCBI
Rnor_5.0250,381,686 - 50,382,003UniSTS
RGSC_v3.4232,051,319 - 32,051,634RGD
RGSC_v3.4232,051,320 - 32,051,637UniSTS
RGSC_v3.1231,971,688 - 31,972,003RGD
Celera228,374,451 - 28,374,776UniSTS
Cytogenetic Map2 RGD
Strain QTL Data
Symbol Name Trait
Mamtr3 Mammary tumor resistance QTL 3 mammary gland integrity trait   (VT:0010552)    

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-05 WF.COP-(D2Rat253-D2Uwm17)/Uwm    WF.COP-(D2Rat253-D2Uwm17/Uwm    Name updated 68913 APPROVED
2012-10-05 WF.COP-(D2Rat253-D2Uwm17)/Uwm    WF.COP-(D2Rat253-D2Uwm17/Uwm    Symbol updated 68687 APPROVED
2012-10-05 WF.COP-(D2Rat253-D2Uwm17)/Uwm    WF.COP-(D2Rat253-D2Uwm17/Uwm    Name updated 68913 APPROVED
2012-10-05 WF.COP-(D2Rat253-D2Uwm17)/Uwm    WF.COP-(D2Rat253-D2Uwm17/Uwm    Symbol updated 68687 APPROVED
2011-02-24 WF.COP-(D2Rat253-D2Uwm17/Uwm    WF.COP-(D2Rat253-D2Uwm17/Uwm    Name updated 68913 APPROVED