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Strain Registration

Strain: SS.LEW-(D5Rat130-D5Rat108)/Jr

Symbol: SS.LEW-(D5Rat130-D5Rat108)/Jr
Strain: S.LEW-(D5Rat130-D5Mco10)
Substrain: Jr
RGD ID: 728145
Citation ID: RRID:RGD_728145
Ontology ID: RS:0000834
Also Known As: S.LEW (5) X6; SS.LEW-(D5Rat130-D5Rat108)/Jr
Type: congenic
Available Source: Not Available
Origination: Department of Physiology and Molecular Medicine, Medical College of Ohio, Toledo, Ohio 43614
Description: S.LEW-D5Rat130/D5Mco10/Jr was selectively bred for 2 generation to fix the chromosome and then backcrossed with S strain
Inbred Generations: F20
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2531,663,789 - 128,034,027RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0531,926,122 - 133,313,852RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0536,590,997 - 137,108,002RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4532,701,659 - 134,872,385RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Two closely linked interactive blood pressure QTL on rat chromosome 5 defined using congenic Dahl rats. Garrett MR and Rapp JP, Physiol Genomics 2002 Feb 28;8(2):81-6.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D5Rat130)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2531,663,789 - 31,663,928 (+)MAPPER
Rnor_6.0531,926,122 - 31,926,260NCBI
Rnor_5.0536,590,997 - 36,591,135UniSTS
RGSC_v3.4532,701,967 - 32,702,105UniSTS
RGSC_v3.4532,701,659 - 32,702,109RGD
RGSC_v3.1532,702,146 - 32,702,284RGD
Celera530,814,646 - 30,814,784UniSTS
RH 3.4 Map5165.04UniSTS
RH 3.4 Map5165.04RGD
RH 2.0 Map5189.1RGD
SHRSP x BN Map519.3299RGD

Flank 2 / 1 (D5Rat108)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25128,033,842 - 128,034,027 (+)MAPPER
Rnor_6.05133,313,668 - 133,313,852NCBI
Rnor_5.05137,107,818 - 137,108,002UniSTS
RGSC_v3.45134,871,897 - 134,872,385RGD
RGSC_v3.45134,871,902 - 134,872,086UniSTS
RGSC_v3.15134,877,128 - 134,877,312RGD
Celera5126,688,474 - 126,688,658UniSTS
RH 3.4 Map5828.8UniSTS
RH 3.4 Map5828.8RGD
RH 2.0 Map5776.9RGD
SHRSP x BN Map566.0999RGD
Cytogenetic Map5q35UniSTS
Strain QTL Data
Symbol Name Trait
Bp156 Blood pressure QTL 156 arterial blood pressure trait   (VT:2000000)    
Bp157 Blood pressure QTL 157 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics Longer congenic segment which retain the QTL allele for low blood pressure as compared to the parent S strain. 619649
strain_life_disease Has low blood pressure alleles. 619649