Strain Report - Rat Genome Database

Name: LEW.BN-( D9Wox24-D9Got22 )/Kini
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Strain Registration

General

Strain: LEW.BN-(D9Wox24-D9Got22)/Kini

Symbol:

LEW.BN-(D9Wox24-D9Got22)/Kini

Strain:

LEW.BN-(D9Wox24-D9Got22)

Substrain:

Kini

RGD ID:

7241248

Citation ID:

RRID:RGD_7241248

Ontology ID:

RS:0003410

Also Known As:

LEW.BN-(D9Wox24-D9Got22)/Kini; LEW.BN

Type:

congenic

Available Source:

Not Available

Origination:

Center for Molecular Medicine, Neuroimmunology Unit, Karolinska Institutet, Stockholm, Sweden

Description:

LEW/Rj females were mated with BN/Rj males, speed congenic strategy was used to generate these congenics; when the donor genome outside of the congenic segment was removed, two heterozygous animals were intercrossed to produce homozygous rats

Last Known Status:

Unknown

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	1,024,537 - 16,665,381	RGD_MAPPER_PIPELINE	mRatBN7.2
Rnor_6.0	9	10,869,391 - 19,076,070	RGD_MAPPER_PIPELINE	Rnor6.0
Rnor_5.0	9	9,858,502 - 17,959,093	RGD_MAPPER_PIPELINE	Rnor5.0
RGSC_v3.4	9	12,323,882 - 12,324,010	RGD_MAPPER_PIPELINE	RGSC3.4

Annotation Click to see Annotation Detail View

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased susceptibility to experimental autoimmune encephalomyelitis (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	A role for VAV1 in experimental autoimmune encephalomyelitis and multiple sclerosis.	Jagodic M, etal., Sci Transl Med. 2009 Dec 9;1(10):10ra21. doi: 10.1126/scitranslmed.3000278.
2.	RGD Strain RSO annotation pipeline	RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D9Wox24)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	1,024,537 - 1,024,636 (-)	MAPPER
Rnor_6.0	9	10,869,391 - 10,869,489	NCBI
Rnor_5.0	9	9,858,502 - 9,858,600	UniSTS
Celera	9	7,483,005 - 7,483,103	UniSTS
Cytogenetic Map	9	q11	UniSTS

Flank 2 / 1 (D9Got22)

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	16,665,252 - 16,665,381 (+)	MAPPER
Rnor_6.0	9	19,075,942 - 19,076,070	NCBI
Rnor_5.0	9	17,958,965 - 17,959,093	UniSTS
RGSC_v3.4	9	12,323,882 - 12,324,010	UniSTS
RGSC_v3.4	9	12,323,883 - 12,324,010	RGD
RGSC_v3.1	9	12,321,205 - 12,321,332	RGD
Celera	9	14,395,577 - 14,395,705	UniSTS
RH 3.4 Map	9	97.9	UniSTS
RH 3.4 Map	9	97.9	RGD
RH 2.0 Map	9	91.7	RGD

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Strain: LEW.BN-(D9Wox24-D9Got22)/Kini

Mammalian Phenotype