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Strain Registration

Strain: SS-Kcnj11em5Mcwi

Symbol: SS-Kcnj11em5Mcwi
Strain: SS-Kcnj11em5
Substrain: Mcwi
RGD ID: 6893385
Citation ID: RRID:RGD_6893385
Ontology ID: RS:0003296
Alleles: Kcnj11em5Mcwi
Also Known As: SS-Kcnj11em5Mcwi; SS-Kcnj11^[em5Mcwi]
Type: mutant
Available Source: Not Available
Origination: PhysGen Knockouts
Description: This strain was produced by injecting ZFNs targeting the sequence CTACAGAGCCCAGGTAccgtacTCGGGAGAGGAGGGC into SS/JrHsdMcwi rat embryos. The resulting mutation is a 8-bp deletion in exon 1.
Last Known Status: Cryopreserved Sperm (as of 2017-01-26)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2196,591,048 - 96,594,574RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01102,103,094 - 102,106,127RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01103,186,859 - 103,190,535RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4196,614,960 - 96,617,993RGD_MAPPER_PIPELINERGSC3.4






References

References - curated
# Reference Title Reference Citation
1. Knockout rats via embryo microinjection of zinc-finger nucleases. Geurts AM, etal., Science. 2009 Jul 24;325(5939):433.
2. PhysGen Knockouts PhysGen Knockout strains
3. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Allelic Variants
Name Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Assembly
Kcnj11em5Mcwi-var1 chr1 102103094 102106127 CAGTGTAAAAACATCTTTTTTTTTTTTGTCTTAGGTTTAGTTTTCCCATCACATGGCTAGCTCAGCAGCGATCACGACGGTTGACATTTATTGAGCACTTGTGTACAGACCAGGCACTTCCGAAGCAAGTATACATGTGTTTTCACCTGCTCAACCTAATGAGGTAGGGACTATTAACATGGGCGAGACAACCGGGTCACAGGGTGGTTCAGCTGGAGCCAGGATTTGAGCCAATCAATACCCCTGAGGCCTACAGCCTCCCTCCCCCTCCCCATGGGCACCTCAGCCTTCCAGCAGAGTCAGGAGACAGCCCAGGCCCTTGACTATGATGTCTGGTGGATGTCAAATGGTGGAGTTGGCCAGACAGACTGAGAGTGGGGGGGGGGTGGAACCTGAGGTGGAAGGATGATGGCCTCCTGAGGTGAGGGAAACGGAGGAGCTAGTCTAAGTAGCTTTTCTGGCCTCTTGCCTGCCGGGCCATGCTAGGTGGCAGACTCTGACAGTGCCTTTTCCCCCCAGTGGCATGCCCACTGCCTCCCCAGCAAGAAAAGCCCAGAGTTCAGGTCACAGATGGGAGGCTTTATTGACGACGGGCCAGTGGGGTTCTGGGCGAGGACACTACACTGCTCTGAGAGTCCGGGCTCAGGTCAAGCCCAAGGGCCTTTTGCCTTGGAGACCTCCCTTTCCCTCACCAGGGTGAACTTTCCAATATTTCTTTTTCTGACAACCTAGACAAGGCATTGCTACCCACCAGTGTCCCCCAGACAAAGTGACAGCTGCCCATGGGGAGCCAAGAGCAGAGTTTTGCCTGAAGTAGATCTTGTATGGCACTCACAGGACCCTTTTCGGCCTCTCAGCCAGGTATCTCAGTGTTTGCCCAATGCCCCACTTCCCAGCCTCTCCGGGGGACAAAACAGGGCAGCAGTCCCCACTCTCTCTGCAGAAGGCTGGAGTCAAGGGTAGAGGACAGAGACACGCGTCTGAACGGGACCATCAAGGTCTCCAATCATTTGCCTCCTTCTTGTCCCCCTTTCTCTCATAAGCCGGCCATATGGAGGAGAGCCTAGGTAAACTTATCCTGTCGTGGCTGTGTGGGCCCCTCAGCTCCCACGCTCTGACACCCACCTCCTCCCTGGCTGGCAGGATTCTTTAGCGTGGCACGAACAGGGCTGGGGCCTGGCCAGGTATTTCTTAGTGGCTACAGAAACAGCAATAGGCTCCCAACTTGGGGGCTGCTTTTGCCCAATTACCTGCCTGCTTGTGGCAGGATGAATCGTGGAGGACCAAGACTGGCTTCCTTCCAGACCTTAGCTTTAGGACCCCTGAACCTTCTATAGCCTCCCCATCGTTGGGCAGGGACATAGGGTAAGCCAGTCCTGAGCTGAGCCCGGGAGGAGCAGGAACAAAAATAACCCGGTACAGGCTCCTGCTGGGGCCAGAAATAGCATAGTGACAAGTATCTTGTAACACCCCAGGCACACAGCGGCGGGGAGGCTGAGCCAAGGAGGGTCTTGTCCCACGCCAGACCCTCATCTGGCCGAGGGGCTCGCACCCCAGCACTCTACATACCGTACTTCACTTTCCATGTGCCCACCTAAGTGAGTGGGGGCCTGAGGGACCGCAACTCAGGACAAGGAATCCGGAGAGATGCTAAACTTGGGCTTGGCCTTTGCCACAGCCACACTGCGCTTGCGCAGGGGCCCTCGCGACGAGGCGAGGGTCAGGGCATCCAGCAGGCTGCGGTCCTCATCAAGCTGGCGGGCTGTGCAGAGTGGTGTGGGCACTTTAACGGTGTTCCCGAATTTGGAGTAGTCCACAGAATAGCGGCCATCCTCCTCGGCCACGATGGGGACAAAACGCTGCCCCCACAGAATCTCGTCAGCCAGATAGGAGGTGCGGGCCTGGGTGGTAATGCCTGTGGTTTCTACCACACCTTCCAAGATGACAATGATCTCCAGGTCCTGGTGGTGGTGCAGGTCACTAGGAGCCAGGTCGTAGAGCGGGCTGTTGGAGTCGATGACGTGGTAGATGATGAGTGGGGCCACCAGAAAGATGCTGTTACCACCCACACCGTTCTCCATGGGGATGTCCACCTGGTGGAGAGGCACAACCTCGCCCTCCGGGCTGGTGGTCTTGCGCACCACCTGCATATGAATGGTGGCGCTAATGATCATGCTTTTTCGGAGGTCCCCTACGCGAAGCATGAAGCACAGGCGGCCATGTCGCAGGGTGATCACGGCATGCTTGCTGAAGATGAGGGTTTCTGCCCGCCGATGGGCCTGTGCCGTTTTCATGAAGATGCAGCCCAGCATGATGGCGTTGATCATTAGCCCTACGATATTCTGCACGATCAGAATAAGGATGGCCAGGGGACATTCCTCTGTCACCATGCGCCCGCCGAAACCAATGGTCACCTGGACCTCGATGGAGAAAAGGAAGGCAGACGAAAAGGAGTGGATGCTTGTGACGCAGGGCACATTGGTGCCCTCTCCGGGGGCCAAGTCACCGTGGGCAAAGGCGATGAGCCACCAGACCATGGCGAAGAGCAGCCAGCTGCACAGGAAGGACATGGTGAAAATGAGCAGCGTGTGGGGCCACTTGAGGTCCACCAGCGTGGTGAACACATCTTGCAGGAAGCGGCCCTGCTCTCGGATGTTCTTGTGGGCGACGTTGCAGTTGCCTTTCTTGGACACGAAGCGGGCCCTCCTCTCCCGAGTACGGTACCTGGGCTCTGTAGGGTCCTCTGCCAGCCGGGTCAGCACATATTCCTCAGGGATAATGCCCTTTCGGGACAGCATGGCTCCGTTGGCCCCAGGAAGGGGTTTCCCCCATGGGGGAGGCACTACACTGGCTTGGCCTAGGGCCTCTTTGTAGGGTCCCCCTCTCTGAGCCCTCTCCTCAAGCTTGCACCAACCTCTGGACTGATATGCCCCCCAGCTGGTTCTGTTTCTTTTTATACTAGCTTCAGATGCCGACGCCCCCTGCTCATTGCTTACTGAGCCCCTGACCCAGCCTGTACTCTACCTGGCCCTGG - deletion Rnor_6.0

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-03 SS-Kcnj11em5Mcwi    SS-Kcnj11em5Mcwi    Symbol updated 68687 APPROVED
2014-04-03 SS-Kcnj11em5Mcwi    SS-Kcnj11em5Mcwi    Symbol updated 68687 APPROVED
2014-04-03 SS-Kcnj11em5Mcwi    SS-Kcnj11em5Mcwi    Name updated 68913 APPROVED
2014-04-03 SS-Kcnj11em5Mcwi    SS-Kcnj11em5Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Kcnj11em5Mcwi    SS-Kcnj11em5Mcwi    Name updated 68913 APPROVED
2013-08-15 SS-Kcnj11em5Mcwi    SS-Kcnj11em5Mcwi    Name updated 68913 APPROVED