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Strain Registration

Strain: DA.F344-Aia1/2

Symbol: DA.F344-Aia1/2
Strain: DA, F344
RGD ID: 629491
Citation ID: RRID:RGD_629491
Ontology ID: RS:0000221
Type: congenic
Available Source: Not Available
Origination: National Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland
Description: genomic segments with region of interest from chr 4 were inserted to DA strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2439,505,275 - 85,379,614RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0437,685,175 - 86,438,507RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0437,534,124 - 151,090,861RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4436,592,628 - 85,014,222RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
joint swelling  (IAGP)

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
plasma corticosterone level

References

References - curated
# Reference Title Reference Citation
1. Evaluation of quantitative trait loci regulating severity of mycobacterial adjuvant-induced arthritis in monocongenic and polycongenic rats: identification of a new regulatory locus on rat chromosome 10 and evidence of overlap with rheumatoid arthritis susceptibility loci. Joe B, etal., Arthritis Rheum 2002 Apr;46(4):1075-85.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D4Mgh14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2439,505,275 - 39,505,420 (+)MAPPER
Rnor_6.0437,685,175 - 37,685,319NCBI
Rnor_5.0437,534,124 - 37,534,268UniSTS
RGSC_v3.4436,592,628 - 36,592,773RGD
RGSC_v3.4436,592,629 - 36,592,773UniSTS
RGSC_v3.1436,711,169 - 36,711,313RGD
Celera434,949,819 - 34,949,963UniSTS
RH 3.4 Map4220.4UniSTS
RH 3.4 Map4220.4RGD
RH 2.0 Map4296.9RGD
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD

Flank 2 / 1 (D4Rat34)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2485,379,421 - 85,379,614 (+)MAPPER
Rnor_6.0486,438,317 - 86,438,507NCBI
Rnor_5.04151,090,671 - 151,090,861UniSTS
RGSC_v3.4485,014,032 - 85,014,222UniSTS
RGSC_v3.4485,014,031 - 85,014,222RGD
RGSC_v3.1485,257,503 - 85,257,693RGD
Celera480,234,809 - 80,234,999UniSTS
RH 3.4 Map4533.1RGD
RH 3.4 Map4533.1UniSTS
SHRSP x BN Map443.1UniSTS
SHRSP x BN Map443.1RGD
FHH x ACI Map453.55RGD
Cytogenetic Map4q24UniSTS

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics In this congenic strain the score of arthritis is 75% higher 625379