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Strain Registration

Strain: DA.F344-Aia1/1

Symbol: DA.F344-Aia1/1
Strain: DA, F344
RGD ID: 629490
Citation ID: RRID:RGD_629490
Ontology ID: RS:0000220
Type: congenic
Available Source: Not Available
Origination: National Institute of Arthritis and Musculoskeletal and Skin Diseases, NIH, Bethesda, Maryland
Description: genomic segments with region of interest from chr 20 were inserted to DA strain
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2202,646,395 - 2,666,654RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0203,151,815 - 3,172,069RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0205,249,981 - 36,993,999RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4202,790,511 - 32,560,683RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
joint swelling  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. Evaluation of quantitative trait loci regulating severity of mycobacterial adjuvant-induced arthritis in monocongenic and polycongenic rats: identification of a new regulatory locus on rat chromosome 10 and evidence of overlap with rheumatoid arthritis susceptibility loci. Joe B, etal., Arthritis Rheum 2002 Apr;46(4):1075-85.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D20Arb2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2202,666,495 - 2,666,654 (+)MAPPER
mRatBN7.2202,646,395 - 2,646,556 (+)MAPPER
Rnor_6.0203,151,815 - 3,151,975NCBI
Rnor_6.0203,171,911 - 3,172,069NCBI
Rnor_5.0205,270,077 - 5,270,235UniSTS
Rnor_5.0205,249,981 - 5,250,141UniSTS
RGSC_v3.4202,790,512 - 2,790,672UniSTS
RGSC_v3.4202,811,408 - 2,811,567RGD
RGSC_v3.4202,790,511 - 2,790,672RGD
RGSC_v3.4202,811,409 - 2,811,567UniSTS
RGSC_v3.1202,790,738 - 2,790,899RGD
Celera2076,870 - 77,030UniSTS
Celera2096,911 - 97,069UniSTS
SHRSP x BN Map200.0RGD
SHRSP x BN Map200.0UniSTS
FHH x ACI Map200.16RGD

Flank 2 / 1 (D20Mit4)
Rat AssemblyChrPosition (strand)Source
Rnor_5.02036,923,763 - 36,923,964NCBI
Rnor_5.02035,793,252 - 35,793,452NCBI
Rnor_5.02036,923,764 - 36,923,964NCBI
Rnor_5.02036,993,799 - 36,993,999NCBI
Rnor_5.02036,993,798 - 36,993,999NCBI
Rnor_5.02035,793,251 - 35,793,452NCBI
RGSC_v3.42032,560,483 - 32,560,683RGD
RGSC_v3.42032,560,484 - 32,560,683UniSTS
RGSC_v3.12032,574,270 - 32,574,620RGD
Celera2034,574,289 - 34,574,502UniSTS
SHRSP x BN Map2022.43RGD
SHRSP x BN Map2022.43UniSTS
FHH x ACI Map2015.7299RGD
Cytogenetic Map20 RGD

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics In this congenic strain the score of arthritis is 75% higher. 625379