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Strain Registration

Strain: ACI.BN-(D5Uwm70-D5Rat32)/Shul

Symbol: ACI.BN-(D5Uwm70-D5Rat32)/Shul
Strain: ACI.BN-(D5Uwm70-D5Rat32)
Substrain: Shul
RGD ID: 5135472
Citation ID: RRID:RGD_5135472
Ontology ID: RS:0002613
Also Known As: ACI.BN-Emca8c2; Emca8c2; ACI.BN-(D5Uwm70-D5Rat32)/Shul
Type: congenic
Available Source: Not Available
Origination: Department of Oncology, McArdle Laboratory for Cancer Research, University of Wisconsin-Madison
Description: This congenic strain contains a region of BN/SsNHsd chromosome 5 transferred to the ACI/SegHsd strain background
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25132,686,313 - 132,686,472RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05138,123,799 - 138,123,957RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05141,933,225 - 141,933,383RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45139,659,415 - 139,659,574RGD_MAPPER_PIPELINERGSC3.4





Experimental Data Annotations    Click to see Annotation Detail View

Rat Strain
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
ACI.BN-(D5Uwm70-D5Rat32)/Shul  IEA 7241799 RGD 

Vertebrate Trait
TermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
mammary gland integrity trait  EXP 7364727 RGD 

Disease Annotations     Click to see Annotation Detail View


References

References - curated
# Reference Title Reference Citation
1. Data registered by Dr. James D. Shull's group Personal communication between Dr. James D. Shull's group and the RGD curators
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines
3. Mapping of three genetic determinants of susceptibility to estrogen-induced mammary cancer within the Emca8 locus on rat chromosome 5. Schaffer BS, etal., Cancer Prev Res (Phila). 2013 Jan;6(1):59-69. doi: 10.1158/1940-6207.CAPR-12-0346-T. Epub 2012 Nov 14.

Region

Position Markers

Flank 2 / 1 (D5Rat32)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25132,686,313 - 132,686,472 (+)MAPPER
Rnor_6.05138,123,799 - 138,123,957NCBI
Rnor_5.05141,933,225 - 141,933,383UniSTS
RGSC_v3.45139,659,416 - 139,659,574UniSTS
RGSC_v3.45139,659,415 - 139,659,574RGD
RGSC_v3.15139,664,642 - 139,664,800RGD
Celera5131,213,176 - 131,213,338UniSTS
RH 3.4 Map5868.7RGD
RH 3.4 Map5868.7UniSTS
RH 2.0 Map5864.3RGD
SHRSP x BN Map570.6499RGD
Strain QTL Data
Symbol Name Trait
Emca12 Estrogen-induced mammary cancer QTL 12 mammary gland integrity trait   (VT:0010552)    

Additional Information