Strain Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Strain Registration

Strain: WF.WKY-(D7Uwm25-D7Rat128)/Uwm

Symbol: WF.WKY-(D7Uwm25-D7Rat128)/Uwm
Strain: WF.WKY-(D7Uwm25-D7Rat128)2
Substrain: Uwm
RGD ID: 5134689
Citation ID: RRID:RGD_5134689
Ontology ID: RS:0002607
Also Known As: WF.WKY-(D7Uwm25-D7Rat128)/Uwm; WF.WKy congenic line E
Type: congenic
Available Source: Not Available
Origination: University of Wisconsin, Madison, Wisconsin, USA
Description: Chromosome 7 segment from WKY that had the Mcs6 QTL was introgressed into a WF genetic background
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2781,134,174 - 114,528,048RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0789,283,487 - 124,246,733RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0789,318,050 - 124,236,725RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.47121,523,977 - 121,524,220RGD_MAPPER_PIPELINERGSC3.4





Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

Phenotype Values via PhenoMiner     Click to see Annotation Detail View
Options:  View chart  |  Download data table  |  View expanded data table

Clinical Measurement
mammary tumor number

References

References - curated
# Reference Title Reference Citation
1. RGD Strain RSO annotation pipeline RGD Automated Pipelines
2. Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6. Sanders J, etal., PLoS One. 2011;6(5):e19891. Epub 2011 May 18.

Region

Position Markers

Flank 1 / 1 (D7Uwm25)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2781,134,174 - 81,134,459 (+)MAPPER
Rnor_6.0789,283,487 - 89,283,769NCBI
Rnor_5.0789,318,050 - 89,318,332UniSTS
Celera778,024,217 - 78,024,499UniSTS
Cytogenetic Map7 RGD

Flank 2 / 1 (D7Rat128)
Rat AssemblyChrPosition (strand)Source
mRatBN7.27114,527,811 - 114,528,048 (+)MAPPER
Rnor_6.07124,246,491 - 124,246,733NCBI
Rnor_5.07124,236,483 - 124,236,725UniSTS
RGSC_v3.47121,523,977 - 121,524,220RGD
RGSC_v3.47121,523,978 - 121,524,220UniSTS
RGSC_v3.17121,558,207 - 121,558,450RGD
Celera7110,841,297 - 110,841,485UniSTS
SHRSP x BN Map766.86RGD
SHRSP x BN Map766.86UniSTS
Cytogenetic Map7q34UniSTS

Additional Information


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-06 WF.WKY-(D7Uwm25-D7Rat128)/Uwm    WF.WKY-(D7Uwm25-D7Rat128)/Uwm    Name updated 68913 APPROVED