Strain Report - Rat Genome Database

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Strain: SHR.BN-(D18Rat113-D18Rat82)/Ipcv

Symbol: SHR.BN-(D18Rat113-D18Rat82)/Ipcv
Strain: SHR.BN-(D18Rat113-D18Rat82)
Substrain: Ipcv
RGD ID: 2312580
Citation ID: RRID:RGD_2312580
Ontology ID: RS:0002148
Also Known As: SHR.BN-(D18Rat113-D18Rat82)/Ipcv;SHR.BN-D18Rat113/D18Rat82;SHR-18; SHR.BN-(D18Rat113-D18Rat82)/Ipcv
Type: congenic
Available Source: Not Available
Origination: Czech Academy of Sciences, Prague, Czech Republic
Description: SHR/OlaIpcv were crossed with BN/Crl, F1 animals were backcrossed with SHR/OlaIpcv and genotyped; heterozygotes with the region of interest were backcrossed with SHR/OlaIpcv and segment of interest fixed by intercrossing heterozygotes
Last Known Status: Unknown
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21870,263,698 - 70,263,868RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0183,719,547 - 73,016,546RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01872,695,068 - 72,695,235RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41873,666,205 - 73,666,623RGD_MAPPER_PIPELINERGSC3.4





Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype

References

References - curated
# Reference Title Reference Citation
1. Dissection of chromosome 18 blood pressure and salt-sensitivity quantitative trait loci in the spontaneously hypertensive rat. Johnson MD, etal., Hypertension. 2009 Sep;54(3):639-45. Epub 2009 Jul 20.
2. RGD Strain RSO annotation pipeline RGD Automated Pipelines

Region

Position Markers

Flank 1 / 1 (D18Rat113)
Rat AssemblyChrPosition (strand)Source
Rnor_6.0183,719,547 - 3,719,746NCBI
SHRSP x BN Map180.0RGD
SHRSP x BN Map180.0UniSTS

Flank 2 / 1 (D18Rat82)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21870,263,698 - 70,263,868 (+)MAPPER
Rnor_6.01873,016,379 - 73,016,546NCBI
Rnor_5.01872,695,068 - 72,695,235UniSTS
RGSC_v3.41873,666,205 - 73,666,623RGD
RGSC_v3.41873,666,389 - 73,666,556UniSTS
RGSC_v3.11873,739,662 - 73,739,829RGD
Celera1868,791,744 - 68,791,911UniSTS
RH 3.4 Map18718.1UniSTS
RH 3.4 Map18718.1RGD
RH 2.0 Map18155.5RGD
SHRSP x BN Map1844.4299RGD
Cytogenetic Map18 RGD
Strain QTL Data
Symbol Name Trait
Bp340 Blood pressure QTL 340 arterial blood pressure trait   (VT:2000000)    

Additional Information

RGD Curation Notes
Note Type Note Reference
strain_characteristics these are salt-resistant as compared to SHR/OlaIpcv 2312571
strain_other transplantation of kidneys from these donor to SHR/OlaIpcv recipients attenuates increased blood pressure but not salt sensitivity 2312571